View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20758_low_19 (Length: 381)
Name: NF20758_low_19
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 113 - 316
Target Start/End: Complemental strand, 36021735 - 36021533
Alignment:
| Q |
113 |
atatatcaacgatgtagaactttttatcctaccagccaaatcataaattattttttaaaattagatatgataaaagtcaaagtcttttaatgatcgaaag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36021735 |
atatatcaacgatgtagaactttttatcctagcagccaaatcataaattattttttaaaattagatatgataagagtcaaagtcttttaatgatcgaaag |
36021636 |
T |
|
| Q |
213 |
aaatataattggttgacagtataattgttttacaatattttgaacgtaacaatttannnnnnnatgcaggaaataactaatataatatcaggatcatatg |
312 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36021635 |
-aatataattggttgaccgtgtaattgttttacaatattttgaacgtaacgatttatttttttatgcaggaaataactaatataatctcaggatcatatg |
36021537 |
T |
|
| Q |
313 |
agtc |
316 |
Q |
| |
|
|||| |
|
|
| T |
36021536 |
agtc |
36021533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 36021856 - 36021758
Alignment:
| Q |
20 |
ctattaccagactcaaaatagcacgatcatattctttatactatttacacaaatcctctctctcttgagnnnnnnnttacttatcgtttttatatatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
36021856 |
ctattaccagactcaaaatagcacgatcatattctttatactatttacaccaatcctctctctcttgagaaaaaaattacttatcgtttatatatatat |
36021758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 36021537 - 36021493
Alignment:
| Q |
328 |
gagtcttgtataagaaaacaaataaaccgcaaaaaatagtataat |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36021537 |
gagtcttgtataagaaaacaaataaaccgcaaaaaatagtctaat |
36021493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University