View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20758_low_2 (Length: 998)

Name: NF20758_low_2
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20758_low_2
NF20758_low_2
[»] chr2 (10 HSPs)
chr2 (10-981)||(38766994-38767970)
chr2 (513-568)||(15370240-15370295)
chr2 (515-568)||(787430-787483)
chr2 (360-437)||(28677636-28677713)
chr2 (514-568)||(6547987-6548041)
chr2 (517-567)||(35809966-35810016)
chr2 (513-567)||(40759259-40759313)
chr2 (660-709)||(1977142-1977191)
chr2 (515-568)||(11513994-11514047)
chr2 (515-568)||(22878196-22878249)
[»] chr5 (7 HSPs)
chr5 (521-565)||(10771813-10771857)
chr5 (514-568)||(11684498-11684552)
chr5 (537-587)||(17368751-17368801)
chr5 (518-568)||(34117470-34117520)
chr5 (513-586)||(17369283-17369356)
chr5 (513-568)||(25720334-25720389)
chr5 (590-638)||(39105478-39105527)
[»] chr8 (14 HSPs)
chr8 (513-568)||(11569374-11569429)
chr8 (534-568)||(24326129-24326163)
chr8 (513-565)||(6526169-6526221)
chr8 (534-565)||(3254317-3254348)
chr8 (513-568)||(16162858-16162913)
chr8 (635-709)||(34522155-34522230)
chr8 (513-568)||(44236740-44236795)
chr8 (515-568)||(2487927-2487980)
chr8 (523-568)||(3953900-3953945)
chr8 (513-566)||(7008698-7008751)
chr8 (535-568)||(8629211-8629244)
chr8 (515-568)||(14926901-14926954)
chr8 (505-554)||(30251363-30251412)
chr8 (535-568)||(43385738-43385771)
[»] chr3 (7 HSPs)
chr3 (521-568)||(22667501-22667548)
chr3 (521-568)||(22724140-22724187)
chr3 (534-568)||(38971356-38971390)
chr3 (519-568)||(27795936-27795985)
chr3 (513-568)||(44014715-44014770)
chr3 (522-568)||(41057253-41057299)
chr3 (366-415)||(40122736-40122785)
[»] chr1 (9 HSPs)
chr1 (514-564)||(32958739-32958789)
chr1 (515-565)||(35017683-35017733)
chr1 (515-568)||(21002253-21002306)
chr1 (524-568)||(31517668-31517712)
chr1 (521-568)||(28836970-28837017)
chr1 (521-568)||(28837278-28837325)
chr1 (513-554)||(473275-473316)
chr1 (354-391)||(2035402-2035439)
chr1 (505-554)||(15477665-15477714)
[»] chr7 (6 HSPs)
chr7 (516-567)||(32791665-32791716)
chr7 (514-568)||(29363606-29363660)
chr7 (515-564)||(1418521-1418570)
chr7 (534-567)||(8094405-8094438)
chr7 (504-568)||(32410638-32410703)
chr7 (601-638)||(33552869-33552906)
[»] chr6 (5 HSPs)
chr6 (513-568)||(28005473-28005528)
chr6 (517-563)||(5977032-5977078)
chr6 (515-565)||(33080497-33080547)
chr6 (514-567)||(10016722-10016775)
chr6 (513-586)||(35070571-35070643)
[»] chr4 (8 HSPs)
chr4 (528-567)||(51560221-51560260)
chr4 (513-567)||(52333697-52333751)
chr4 (522-563)||(1075561-1075602)
chr4 (506-559)||(29126173-29126226)
chr4 (513-558)||(38478820-38478865)
chr4 (535-568)||(50298613-50298646)
chr4 (534-567)||(52746777-52746810)
chr4 (513-554)||(54426155-54426196)


Alignment Details
Target: chr2 (Bit Score: 876; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 876; E-Value: 0
Query Start/End: Original strand, 10 - 981
Target Start/End: Original strand, 38766994 - 38767970
Alignment:
Q  10 catcatcatcaatataaacataacgcttcattgttgaattctgagcatctaattgtggatagataaatattctctacacctccattgcaatgctcaaaga 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38766994 catcatcatcaatgtaaacataacgcttcattgttgaattctgagcatctaattgtggatagataaatattctctacacctccattgcaatgctcaaaga 38767093  T
Q  110 gaacaattttgaaacagtattaaacagccgtgttctgcaagcaacaaggagattnnnnnnnnnnnnn--caggtttgcacataaatcttgatatcatgaa 207  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||               |||||||||||||||||||||||||||||||    
T  38767094 gaacaattttgaaacagtattaaacagctgtgttctgcaagcaacaaggagattaaaaaaaaaaaaaaacaggtttgcacataaatcttgatatcatgaa 38767193  T
Q  208 aaataaaaccagggaagaatatcaccagtgataattataataaaacgagcatctcaataagtagcctacattagcaaattaaggttgtgtttggattgat 307  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38767194 aaataaaaccagggaagaatatcaccagagataattataataaaccgagcatctcaataagtagcctacattagcaaattaaggttgtgtttggattgat 38767293  T
Q  308 tatgaacaccttatttgggcttatatgacataagcaattgtctgagtgttcaggagaacttatgaaaatagtttatgacatatcgacaagttgtttgtcg 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  38767294 tatgaacaccttatttgggcttatatgacataagcaattgtctgagtgttcaggagaacttatgaaaatagtttatgacatatccacaagttgtttctcg 38767393  T
Q  408 cttatttcaataagctctccataataacttctagaaaaacaattttattatattttctcttttattatgaaaatagcttatacatgattgtttatataat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38767394 cttatttcaataagctctccataataacttctagaaaaacaattttattatattttctcttttattatgaaaatagcttatacatgattgtttatataat 38767493  T
Q  508 aaggccctgtttagattggcttatacgagcttatctactggcataagcacttgtgagac--tgagacaacttgtgaaaacaaatttcatacgcta-ttta 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  38767494 aaggccctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactgtgagacaacttgtgaaaacaaatttcatacgctacttta 38767593  T
Q  605 tgcttattttaataagttctccaagatagcttatctcgtgtaatagaaatacttgttcataagcgcttatgatgtaagctggaaattaagttgtttatcc 704  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38767594 tgcttattttgataagttctccaagatagcttatctcgtgtaatagaaatacttgttcataagcgcttatgatgtaagctggaaattaagttgtttatcc 38767693  T
Q  705 taacaaagcataggtaattattgaagaagtgcttaattgaagtgtttacccaaacacatcctaaatgccatgatattcttgacttatctaacttaaaaaa 804  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38767694 taacaaagcataggtaattattgaagaagtgcttaattgaagtgtttacccaaacacatcctaaatgccatgatattcttgacttatctaacttaaaaaa 38767793  T
Q  805 tgcaataaaagaattgagcacacagcgtgagatatattgtgaatgatacctttatctaaaactaaaaagatcaaagctcaactgaatgtcgaggttcata 904  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38767794 tgcaataaaagaattgagcacacaacgtgagatatattgtgaatgatacctttatctaaaactaaaaagatcaaagctcaactgaatgtcgaggttcata 38767893  T
Q  905 gtgaatttaacatgatcagataaatatgaggcaaaagtcttagtacatgtttggcattacagtgaattggacaaaat 981  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38767894 gtgaatttaacatgatcagataaatatgaggcaaaagtcttagtacatgtttggcattacagtgaattggacaaaat 38767970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 513 - 568
Target Start/End: Original strand, 15370240 - 15370295
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||||| ||||| |||||  ||||||||||||||||||||||| |||||||||||    
T  15370240 cctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactg 15370295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 568
Target Start/End: Complemental strand, 787483 - 787430
Alignment:
Q  515 tgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||| |||||| |||| ||||| ||||||||||||||||||||||||| ||||    
T  787483 tgtttggattggattattcgagcatatctactggcataagcacttgtgacactg 787430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 437
Target Start/End: Original strand, 28677636 - 28677713
Alignment:
Q  360 ggagaacttatgaaaatagtttatgacatatcgacaagttgtttgtcgcttatttcaataagctctccataataactt 437  Q
    |||||||||||||||| || ||||||||| |  | |||||||||   ||||||||| |||||||||||| ||||||||    
T  28677636 ggagaacttatgaaaacagcttatgacattttcataagttgttttcggcttatttccataagctctccaaaataactt 28677713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 6548041 - 6547987
Alignment:
Q  514 ctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    |||||| ||||| ||||| | |||||||||||| ||||||| |||||||||||||    
T  6548041 ctgtttggattgacttattcaagcttatctactagcataagaacttgtgagactg 6547987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 517 - 567
Target Start/End: Complemental strand, 35810016 - 35809966
Alignment:
Q  517 tttagattggcttatacgagcttatctactggcataagcacttgtgagact 567  Q
    ||||||||| |||||  |||||||||||| |||||||||| ||||||||||    
T  35810016 tttagattgacttatttgagcttatctaccggcataagcagttgtgagact 35809966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 513 - 567
Target Start/End: Complemental strand, 40759313 - 40759259
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgagact 567  Q
    ||||||| ||||| |||||  ||||||||||| || |||||||||||||||||||    
T  40759313 cctgtttggattgccttatttgagcttatctattgacataagcacttgtgagact 40759259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 660 - 709
Target Start/End: Original strand, 1977142 - 1977191
Alignment:
Q  660 ttcataagcgcttatgatgtaagctggaaattaagttgtttatcctaaca 709  Q
    |||||||||||||||| ||||||||| ||| | |||||||||||| ||||    
T  1977142 ttcataagcgcttatgttgtaagctgcaaagttagttgtttatccaaaca 1977191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 515 - 568
Target Start/End: Complemental strand, 11514047 - 11513994
Alignment:
Q  515 tgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||| |||||| ||||  ||| ||||||||| |||||||||||||||||||||    
T  11514047 tgtttggattggtttatttgagattatctactagcataagcacttgtgagactg 11513994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 515 - 568
Target Start/End: Complemental strand, 22878249 - 22878196
Alignment:
Q  515 tgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||| ||||| |||||  ||||||||| |||| ||||||||||||||||||||    
T  22878249 tgtttggattgacttatttgagcttatccactgacataagcacttgtgagactg 22878196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 521 - 565
Target Start/End: Original strand, 10771813 - 10771857
Alignment:
Q  521 gattggcttatacgagcttatctactggcataagcacttgtgaga 565  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  10771813 gattggcttatttgagcttatctactggcataagcacttgtgaga 10771857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 11684552 - 11684498
Alignment:
Q  514 ctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||||||||||| ||||  |||||||||||||| ||| ||||||||||||||||    
T  11684552 ctgtttagattggtttatttgagcttatctactgtcatgagcacttgtgagactg 11684498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 537 - 587
Target Start/End: Complemental strand, 17368801 - 17368751
Alignment:
Q  537 cttatctactggcataagcacttgtgagactgagacaacttgtgaaaacaa 587  Q
    ||||||||||||||||||||||||||| || |||| ||||| |||||||||    
T  17368801 cttatctactggcataagcacttgtgacaccgagagaacttatgaaaacaa 17368751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 518 - 568
Target Start/End: Original strand, 34117470 - 34117520
Alignment:
Q  518 ttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||||||||||||  |||||||||||||||||||| ||||||| ||||||    
T  34117470 ttagattggcttattggagcttatctactggcataaacacttgttagactg 34117520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 586
Target Start/End: Complemental strand, 17369356 - 17369283
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactgagacaacttgtgaaaaca 586  Q
    ||||||| ||||| |||||  || ||||||||||| ||||| ||||||||| ||||||| ||||| ||||||||    
T  17369356 cctgtttggattgacttatttgaacttatctactgacataatcacttgtgacactgagagaacttatgaaaaca 17369283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 568
Target Start/End: Original strand, 25720334 - 25720389
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    |||||||  ||| ||||||  ||| |||||||||||||||||||||||||||||||    
T  25720334 cctgtttgaattagcttatttgaggttatctactggcataagcacttgtgagactg 25720389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 590 - 638
Target Start/End: Complemental strand, 39105527 - 39105478
Alignment:
Q  590 ttcatacgctatttat-gcttattttaataagttctccaagatagcttat 638  Q
    |||||| ||||||| | ||||||||| |||||||||||||||||||||||    
T  39105527 ttcataagctatttttagcttattttcataagttctccaagatagcttat 39105478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 513 - 568
Target Start/End: Original strand, 11569374 - 11569429
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||||| |||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  11569374 cctgttttgattggcttatcagagcttatctgctggcataaccacttgtgagactg 11569429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 534 - 568
Target Start/End: Complemental strand, 24326163 - 24326129
Alignment:
Q  534 gagcttatctactggcataagcacttgtgagactg 568  Q
    |||||||||||||||||||||||||||||||||||    
T  24326163 gagcttatctactggcataagcacttgtgagactg 24326129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 513 - 565
Target Start/End: Original strand, 6526169 - 6526221
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgaga 565  Q
    ||||||| ||||| ||||| ||||| ||||||||||||||||| |||||||||    
T  6526169 cctgtttggattgacttattcgagcctatctactggcataagcccttgtgaga 6526221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 565
Target Start/End: Complemental strand, 3254348 - 3254317
Alignment:
Q  534 gagcttatctactggcataagcacttgtgaga 565  Q
    ||||||||||||||||||||||||||||||||    
T  3254348 gagcttatctactggcataagcacttgtgaga 3254317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 568
Target Start/End: Complemental strand, 16162913 - 16162858
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||||| |||||||||||  ||| ||||||||| |||||| ||||||||||||||    
T  16162913 cctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactg 16162858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 709
Target Start/End: Original strand, 34522155 - 34522230
Alignment:
Q  635 ttatctcgtgtaatagaaata-cttgttcataagcgcttatgatgtaagctggaaattaagttgtttatcctaaca 709  Q
    |||||| |||| ||||||||| ||| |||||||||||||||| |||||| || ||| |||||| ||||||| ||||    
T  34522155 ttatcttgtgtcatagaaatagcttattcataagcgcttatgctgtaagttgcaaaataagttttttatccaaaca 34522230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 568
Target Start/End: Original strand, 44236740 - 44236795
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||||| ||||  |||||  ||| |||||||||||||||||||||||||||||||    
T  44236740 cctgtttggattaccttatttgagtttatctactggcataagcacttgtgagactg 44236795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 515 - 568
Target Start/End: Original strand, 2487927 - 2487980
Alignment:
Q  515 tgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||| |||||||||||  ||| | |||||||| ||||||||||||||||||||    
T  2487927 tgtttggattggcttatttgagttcatctactgacataagcacttgtgagactg 2487980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 523 - 568
Target Start/End: Complemental strand, 3953945 - 3953900
Alignment:
Q  523 ttggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    |||||||||  |||| ||||||||||||||||||||||||| ||||    
T  3953945 ttggcttatttgagcctatctactggcataagcacttgtgaaactg 3953900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 513 - 566
Target Start/End: Complemental strand, 7008751 - 7008698
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgagac 566  Q
    |||||||  |||| |||||  ||| |||||||||||||||||||||||||||||    
T  7008751 cctgtttgaattgacttatttgagtttatctactggcataagcacttgtgagac 7008698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 568
Target Start/End: Complemental strand, 8629244 - 8629211
Alignment:
Q  535 agcttatctactggcataagcacttgtgagactg 568  Q
    |||||| |||||||||||||||||||||||||||    
T  8629244 agcttacctactggcataagcacttgtgagactg 8629211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 515 - 568
Target Start/End: Original strand, 14926901 - 14926954
Alignment:
Q  515 tgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||| ||||| |||||  || ||||| ||||||||||||||||||||||||||    
T  14926901 tgtttggattgacttatttgaacttatttactggcataagcacttgtgagactg 14926954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 505 - 554
Target Start/End: Original strand, 30251363 - 30251412
Alignment:
Q  505 aataaggccctgtttagattggcttatacgagcttatctactggcataag 554  Q
    ||||||| ||||||| |||||||||||  |||||||||||||| ||||||    
T  30251363 aataagggcctgtttggattggcttatttgagcttatctactgacataag 30251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 568
Target Start/End: Complemental strand, 43385771 - 43385738
Alignment:
Q  535 agcttatctactggcataagcacttgtgagactg 568  Q
    ||||||||||||||||||||||| ||||||||||    
T  43385771 agcttatctactggcataagcacctgtgagactg 43385738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 521 - 568
Target Start/End: Complemental strand, 22667548 - 22667501
Alignment:
Q  521 gattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||||    
T  22667548 gattggcttatttgagcttatctactgacataagcacttgtgagactg 22667501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 521 - 568
Target Start/End: Complemental strand, 22724187 - 22724140
Alignment:
Q  521 gattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||||    
T  22724187 gattggcttatttgagcttatctactgacataagcacttgtgagactg 22724140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 534 - 568
Target Start/End: Complemental strand, 38971390 - 38971356
Alignment:
Q  534 gagcttatctactggcataagcacttgtgagactg 568  Q
    |||||||||||||||||||||||||||||||||||    
T  38971390 gagcttatctactggcataagcacttgtgagactg 38971356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 519 - 568
Target Start/End: Original strand, 27795936 - 27795985
Alignment:
Q  519 tagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    |||||| ||||||  |||||||||||||||||||||||||||||| ||||    
T  27795936 tagattagcttatttgagcttatctactggcataagcacttgtgaaactg 27795985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 568
Target Start/End: Original strand, 44014715 - 44014770
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||||| |||||||||||  ||| ||||||||| |||||| ||||||||||||||    
T  44014715 cctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactg 44014770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 522 - 568
Target Start/End: Complemental strand, 41057299 - 41057253
Alignment:
Q  522 attggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||||||||  ||||||||||||  |||||||||||||||||||||    
T  41057299 attggcttatttgagcttatctacatgcataagcacttgtgagactg 41057253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 40122736 - 40122785
Alignment:
Q  366 cttatgaaaatagtttatgacatatcgacaagttgtttgtcgcttatttc 415  Q
    ||||||||||||||||||||||| || | ||||||||| | |||||||||    
T  40122736 cttatgaaaatagtttatgacatctctataagttgtttttagcttatttc 40122785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 514 - 564
Target Start/End: Complemental strand, 32958789 - 32958739
Alignment:
Q  514 ctgtttagattggcttatacgagcttatctactggcataagcacttgtgag 564  Q
    |||||||||||| |||||  |||||||||||||| ||||||||||||||||    
T  32958789 ctgtttagattgacttatttgagcttatctactgtcataagcacttgtgag 32958739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 515 - 565
Target Start/End: Complemental strand, 35017733 - 35017683
Alignment:
Q  515 tgtttagattggcttatacgagcttatctactggcataagcacttgtgaga 565  Q
    |||||||||||||||||  ||||||||||| |||||||| |||||||||||    
T  35017733 tgtttagattggcttatttgagcttatctattggcataaacacttgtgaga 35017683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 568
Target Start/End: Complemental strand, 21002306 - 21002253
Alignment:
Q  515 tgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||| |||||||||||  ||||||||||||| ||||||| |||||||||||||    
T  21002306 tgtttggattggcttatttgagcttatctacttgcataagaacttgtgagactg 21002253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 524 - 568
Target Start/End: Original strand, 31517668 - 31517712
Alignment:
Q  524 tggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||    
T  31517668 tggcttatttgagcttatttactggcataagcacttgtgagactg 31517712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 568
Target Start/End: Original strand, 28836970 - 28837017
Alignment:
Q  521 gattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||    
T  28836970 gattggcctatatgagctaatctactgacataagcacttgtgagactg 28837017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 568
Target Start/End: Original strand, 28837278 - 28837325
Alignment:
Q  521 gattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    |||||||||||  |||||||||||||| |||||||||||| |||||||    
T  28837278 gattggcttatttgagcttatctactgacataagcacttgagagactg 28837325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 513 - 554
Target Start/End: Complemental strand, 473316 - 473275
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataag 554  Q
    |||||||||||||||||||  |||| ||||||||||||||||    
T  473316 cctgtttagattggcttatttgagcctatctactggcataag 473275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 2035402 - 2035439
Alignment:
Q  354 tgttcaggagaacttatgaaaatagtttatgacatatc 391  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  2035402 tgttcaagagaacttatgaaaatagcttatgacatatc 2035439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 505 - 554
Target Start/End: Complemental strand, 15477714 - 15477665
Alignment:
Q  505 aataaggccctgtttagattggcttatacgagcttatctactggcataag 554  Q
    ||||||| ||||||| |||||||||||  ||||||||||||| |||||||    
T  15477714 aataagggcctgtttggattggcttattagagcttatctacttgcataag 15477665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 567
Target Start/End: Original strand, 32791665 - 32791716
Alignment:
Q  516 gtttagattggcttatacgagcttatctactggcataagcacttgtgagact 567  Q
    |||| |||||||||||  ||||||||||||| ||||||||||| ||||||||    
T  32791665 gtttggattggcttatcagagcttatctactagcataagcactagtgagact 32791716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 514 - 568
Target Start/End: Complemental strand, 29363660 - 29363606
Alignment:
Q  514 ctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    |||||| |||||||||||  || ||||||||||  ||||||||||||||||||||    
T  29363660 ctgtttggattggcttatttgaacttatctactaacataagcacttgtgagactg 29363606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 515 - 564
Target Start/End: Complemental strand, 1418570 - 1418521
Alignment:
Q  515 tgtttagattggcttatacgagcttatctactggcataagcacttgtgag 564  Q
    ||||| ||||| |||||  |||||||||||||||||||||||||| ||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcataagcacttatgag 1418521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 534 - 567
Target Start/End: Complemental strand, 8094438 - 8094405
Alignment:
Q  534 gagcttatctactggcataagcacttgtgagact 567  Q
    ||||||||||||| ||||||||||||||||||||    
T  8094438 gagcttatctactagcataagcacttgtgagact 8094405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 504 - 568
Target Start/End: Complemental strand, 32410703 - 32410638
Alignment:
Q  504 taataaggccctgt-ttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    |||||||| ||||| || |||||||||||  ||||||||||| ||||||||||| |||||| ||||    
T  32410703 taataagggcctgtcttggattggcttatttgagcttatctattggcataagcatttgtgaaactg 32410638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 601 - 638
Target Start/End: Original strand, 33552869 - 33552906
Alignment:
Q  601 tttatgcttattttaataagttctccaagatagcttat 638  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  33552869 tttatgcttattttcataagttctctaagatagcttat 33552906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 568
Target Start/End: Original strand, 28005473 - 28005528
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactg 568  Q
    |||||||||||| ||| ||  ||||||| |||||||||||||||||||| ||||||    
T  28005473 cctgtttagattagctcatttgagcttacctactggcataagcacttgtaagactg 28005528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 517 - 563
Target Start/End: Complemental strand, 5977078 - 5977032
Alignment:
Q  517 tttagattggcttatacgagcttatctactggcataagcacttgtga 563  Q
    ||||||||| ||||| |||||||||||||| ||||||||| ||||||    
T  5977078 tttagattgacttattcgagcttatctactagcataagcatttgtga 5977032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 515 - 565
Target Start/End: Original strand, 33080497 - 33080547
Alignment:
Q  515 tgtttagattggcttatacgagcttatctactggcataagcacttgtgaga 565  Q
    ||||| ||| |||||||  |||||||| |||||||||||||||||||||||    
T  33080497 tgtttggataggcttatttgagcttatttactggcataagcacttgtgaga 33080547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 514 - 567
Target Start/End: Complemental strand, 10016775 - 10016722
Alignment:
Q  514 ctgtttagattggcttatacgagcttatctactggcataagcacttgtgagact 567  Q
    |||||| |||||| ||||  |||||||||||| ||||||| |||||||||||||    
T  10016775 ctgtttggattggtttatttgagcttatctacaggcataaacacttgtgagact 10016722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 513 - 586
Target Start/End: Original strand, 35070571 - 35070643
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgagactgagacaacttgtgaaaaca 586  Q
    ||||||| |||||||||||  ||||||| ||||||||| |||  ||||||||||||||| |||||  |||||||    
T  35070571 cctgtttggattggcttatttgagcttacctactggcacaag-tcttgtgagactgagagaacttacgaaaaca 35070643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 567
Target Start/End: Original strand, 51560221 - 51560260
Alignment:
Q  528 ttatacgagcttatctactggcataagcacttgtgagact 567  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  51560221 ttatatgagcttatctactggcataagcacttatgagact 51560260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 513 - 567
Target Start/End: Complemental strand, 52333751 - 52333697
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcacttgtgagact 567  Q
    ||||||| |||||||||||  |||||||| ||||| | |||||||||||||||||    
T  52333751 cctgtttcgattggcttatttgagcttatttactgacctaagcacttgtgagact 52333697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 522 - 563
Target Start/End: Complemental strand, 1075602 - 1075561
Alignment:
Q  522 attggcttatacgagcttatctactggcataagcacttgtga 563  Q
    ||||||||||  |||||||||||||||||||| |||||||||    
T  1075602 attggcttatttgagcttatctactggcataaacacttgtga 1075561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 506 - 559
Target Start/End: Original strand, 29126173 - 29126226
Alignment:
Q  506 ataaggccctgtttagattggcttatacgagcttatctactggcataagcactt 559  Q
    |||||| | ||||| |||||||||||  |||||||||||| |||||||||||||    
T  29126173 ataagggcttgtttggattggcttatttgagcttatctaccggcataagcactt 29126226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 513 - 558
Target Start/End: Complemental strand, 38478865 - 38478820
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataagcact 558  Q
    ||||||| |||||||||||  |||| ||||||||||||||||||||    
T  38478865 cctgtttggattggcttatttgagcatatctactggcataagcact 38478820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 568
Target Start/End: Complemental strand, 50298646 - 50298613
Alignment:
Q  535 agcttatctactggcataagcacttgtgagactg 568  Q
    ||||||||||||| ||||||||||||||||||||    
T  50298646 agcttatctactgacataagcacttgtgagactg 50298613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 534 - 567
Target Start/End: Original strand, 52746777 - 52746810
Alignment:
Q  534 gagcttatctactggcataagcacttgtgagact 567  Q
    ||||||||| ||||||||||||||||||||||||    
T  52746777 gagcttatcaactggcataagcacttgtgagact 52746810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 513 - 554
Target Start/End: Complemental strand, 54426196 - 54426155
Alignment:
Q  513 cctgtttagattggcttatacgagcttatctactggcataag 554  Q
    ||||||| |||||||||||  |||||||||||||||||||||    
T  54426196 cctgtttggattggcttatttgagcttatctactggcataag 54426155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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