View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_22 (Length: 374)
Name: NF20758_low_22
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 28859158 - 28858821
Alignment:
| Q |
19 |
acaggacatagaaataaattttatattggatgcaaagaatattaatcatcaacagaagcacatgttcgggaaccgagaagcatatcaatgatgcttagaa |
118 |
Q |
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| T |
28859158 |
acaggacatagaaataaattttatattggatgcaaagaatattaatca---acagaagcacatgttcgggaactgagaagcatatcaatgatgcttagaa |
28859062 |
T |
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| Q |
119 |
catgcttataaattaatatgattattctttcaaaaaa-taaaattaatatgattattgaagcattctttagaagacaatagataaattactcacacaaat |
217 |
Q |
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| T |
28859061 |
catgcttataaattaatatgattattctttcaaaaaaataaaattaatattattattgaagcattctttagaagacaatagataaattactcacacaaat |
28858962 |
T |
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| Q |
218 |
actaannnnnnnatacattgattagttgtggaatattcattaactgtttcatataattaaaaatgataaaattatttcgaggaatctttctggaaatgta |
317 |
Q |
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| T |
28858961 |
actaatttttttatacattggttagttgtggaatattcattaactgtttcatataattaaaaatgataaaattatttcgaggaatctttctggaaatgta |
28858862 |
T |
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| Q |
318 |
taaaaatgtctataatttgaaaactttcaacaagagttcat |
358 |
Q |
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| T |
28858861 |
taaaaatgtctataatttgaaaactttcaacaagagttcat |
28858821 |
T |
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