View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_24 (Length: 354)
Name: NF20758_low_24
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 354
Target Start/End: Original strand, 31463597 - 31463937
Alignment:
| Q |
12 |
atgaatgcgatgaatatcagactcgattgttcgtgactttgatttatgaattttaccaaatatagcccacgttctttgcttctcgataaattaggttctt |
111 |
Q |
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| T |
31463597 |
atgaatgcgatgaatatcagactcgattgttcgtgactttgatttatgaattttaccaaatatagcccacgttctttgcttctcgataaattaggttctt |
31463696 |
T |
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| Q |
112 |
ctgttcattatactatttttgactagagatgttcttctgtccattattattcacgaacaaataaattattatttgtttctattgcaaatcattttagata |
211 |
Q |
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| T |
31463697 |
ctgttcattatactatttttgactaga--tgttcttctgtccattattattcacgaacaaataaattattatttgtttctattgcaaatcattttagata |
31463794 |
T |
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| Q |
212 |
gtatgtcattgaaacaaaacaaataatatatggtcattagtatatggccgtccagccattaacttccataattaaatgttaattctccaatcggaatata |
311 |
Q |
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| T |
31463795 |
gtatgtcattgaaacaaaacaaataatatatggtcattagtatatggccgtccagccattaacttccataattaaatgttaattctccaatcggaatata |
31463894 |
T |
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| Q |
312 |
tagtgctggcgtctactctagaataaaattttacttgtttgaa |
354 |
Q |
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| T |
31463895 |
tagtgctggcgtctactctagaataaaattttacttgtttgaa |
31463937 |
T |
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