View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_26 (Length: 342)
Name: NF20758_low_26
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 57 - 337
Target Start/End: Complemental strand, 7425770 - 7425482
Alignment:
| Q |
57 |
ttgatttaccttcttatcgttttcgttactcttatttcgatgagtttggtttatgtctcctctcctcaccctttatttttatattttatattaataatac |
156 |
Q |
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| T |
7425770 |
ttgatttaccttcttatcgttttcgttactcttatttcgatgagtttggtttatgtctcctctcctcaccttttatttttatattttatattaataatac |
7425671 |
T |
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| Q |
157 |
cttaagagagattttaaaggattaataaccgcacaaag--------nnnnnnnnnngtaaaagtggtaccaacatagttgaaatgtcaacgtattatcat |
248 |
Q |
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| T |
7425670 |
tttaagtgagattttaaaggattaatgaccgcacagagttttttttttttttttttgtcaaagtggtaccaacatagttgaaatgtcaacgtattatcat |
7425571 |
T |
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| Q |
249 |
gatacaactttcgttaaatttgttnnnnnnnncttcacagcaccttacatcagattctgtttaacaaatagccatcaacctatgcttct |
337 |
Q |
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| T |
7425570 |
aatgcaactttcgttaaatttgttaaaaaaaacttcacagcaccttacatcagattctgtttaacaaatagccatcaacctatgattct |
7425482 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 29493361 - 29493418
Alignment:
| Q |
56 |
gttgatttaccttcttatcgttttcgttactcttatttcgatgagtttggtttatgtc |
113 |
Q |
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||||| |||| ||||||||||||| ||| |||| ||| ||||||||||||||||||| |
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| T |
29493361 |
gttgacttactttcttatcgtttttgtttatcttgttttgatgagtttggtttatgtc |
29493418 |
T |
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