View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_3 (Length: 751)
Name: NF20758_low_3
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 28029282 - 28029678
Alignment:
| Q |
1 |
ttttcttgatactcaattttaggaagaatgtttcagggtcagcataataatttttaatagtgagggagccttacaacaaatataaatgaggnnnnnnnnn |
100 |
Q |
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| T |
28029282 |
ttttcttgatactttattttaggaagaatgtttcagggtgagcctaataatttttaatagtgagtgagctttacaacaaatataaatgaggtttttttt- |
28029380 |
T |
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| Q |
101 |
nattgcataagaaacttgtttgtttgtggatataaagtagtgg----tttaatgactttacttttggagctatcctggaaagttcacaaattccatttcc |
196 |
Q |
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| T |
28029381 |
-attgcataagaaacttgtttgtttgtggatataaagcagtggccggtttaatgactttacttttggagctatcctggaaagttcacaaattccatttcc |
28029479 |
T |
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| Q |
197 |
ttgataagaagcgttttttcttgtcgatatgactacgaaaatttccttgagaccaaatagttgcctcacacacagccac--ataatcta--ttatgaaat |
292 |
Q |
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| T |
28029480 |
ttgataagaagcgttttttcttgtcgatatgactacgaaaatttccttgagaccaaatagttgcctcacacacagccacatatagtctattttatgaaat |
28029579 |
T |
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| Q |
293 |
tgccttataggtacaatcgtattattttctttggttaaccaaagttgtgagactccatcgtaatttttcttatgacgttagttaaacggatttttcatc |
391 |
Q |
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| T |
28029580 |
tgccttataggtacaatcgtattattttctttggttaaccaaagttgtgagactccatcataatttttcttatgacgttagttaaacggatttttcatc |
28029678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 422 - 590
Target Start/End: Original strand, 28029673 - 28029847
Alignment:
| Q |
422 |
ttcatcgtaatactataatacatacataaagtataatatttgtaccgataaataaatatggagtgaagttgaaacgtgaaagtccatgcaagttaggtat |
521 |
Q |
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| T |
28029673 |
ttcatcgtaatactataatacatacataaagtataatatttgtaccgataaataaatatggagtgaagttgaaacgtgaaagtccatgcaagttaggtat |
28029772 |
T |
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| Q |
522 |
atcagaatatgtacaacaataaatcttgaaga------gaaaattctcgacagagggatttcattaatcaaatag |
590 |
Q |
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| T |
28029773 |
atcagaatatgtacaacaataaatcttgaagagaaaatgaaaattctcgacagagggatttcattaatcaaatag |
28029847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 619 - 735
Target Start/End: Original strand, 28029876 - 28029991
Alignment:
| Q |
619 |
gacatgtttaaaactaatctttcagctgttcactatgtacagatctaattaaacattnnnnnnnggacagaaaatgagatcttaacttttacatgcctaa |
718 |
Q |
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| T |
28029876 |
gacatgtttaaaactaatctttcagctgttcactatgtacagatctaattaaacatt-aaaaaaggacagaaaatgagatcttaacttttacatgcctaa |
28029974 |
T |
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| Q |
719 |
cagttagacaacaaatc |
735 |
Q |
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| T |
28029975 |
tagttagacaacaaatc |
28029991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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