View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20758_low_31 (Length: 314)
Name: NF20758_low_31
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 24 - 296
Target Start/End: Original strand, 34550903 - 34551170
Alignment:
| Q |
24 |
tatttcacaagag-cgtagacttagttccactgcagtctgcagcataatatgttgttatgttagcgttttttgagcttgagatttgtcttgactttagcc |
122 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34550903 |
tatttcacaagaggcgtagacttagttccactgcagtctgcagcataatatgttattatgttagcgttttttgagcttgagatttgtcttgactttagcc |
34551002 |
T |
|
| Q |
123 |
tatccatttaaaaaatccatgtaaatttttatttatttatttatagaagaaaaatattccgaggtacggctgttaaaaatactcaaattataggagcaat |
222 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34551003 |
tatccatttaaaaaatccatgtaaatt--------tttatttatggaagaaaaatattccgaggtacggctgttaaaaatactcaaattataggagcaat |
34551094 |
T |
|
| Q |
223 |
tcttttaacaattggcataggaa--ttttaatattaggcttgtccttgtttaagaacttattttgaatagacagat |
296 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34551095 |
tcttttaacaattggcataggaattttttaatattagacttgtccttgtttaagaacttattttgaatagacagat |
34551170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 279
Target Start/End: Original strand, 34547746 - 34547858
Alignment:
| Q |
168 |
gaagaaaaatattccga-ggtacggctgttaaaaatactcaaattataggagcaattcttttaacaattggcataggaattttaatattaggcttgtcct |
266 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||||||| ||| | ||| || |||||||||||||||||||| ||||||| |||| |||||| | | |
|
|
| T |
34547746 |
gaagaaaattattccgaaggtacggccattaaaaatactctaatcacagggacagttcttttaacaattggcatacgaattttgatataaggctttttcc |
34547845 |
T |
|
| Q |
267 |
tgtttaagaactt |
279 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34547846 |
tgtttaagaactt |
34547858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University