View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_34 (Length: 283)
Name: NF20758_low_34
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 19378643 - 19378424
Alignment:
| Q |
21 |
atcacaagaaagttgagaattaacataatcttcagtttgattgagttcttgaagatcacccttgttggggtcacaaaattgtgtgattgactttgcaaca |
120 |
Q |
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| T |
19378643 |
atcacaagaaagttgagaatcaacataatcttcagtttgattgagttcttgaagatcacccttgttggggtcacaaaattgtgtgattgactttgcaaca |
19378544 |
T |
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| Q |
121 |
tcctttctgtttcatattgtattgtcgcatttaatcaatattgaaacaatgaagctggcatttgcttgactcatcagataatttcaaactagactagtca |
220 |
Q |
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| T |
19378543 |
tcctttctgtttcatattgtattgtcgcatttaatcaatattgaaacaatgaagctggcatttgcttgactcatcagataatttcaaactagactagtca |
19378444 |
T |
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| Q |
221 |
ttttggatcgacattatgat |
240 |
Q |
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| T |
19378443 |
ttttggatcgacattatgat |
19378424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 237
Target Start/End: Complemental strand, 18018691 - 18018522
Alignment:
| Q |
84 |
gttggggtcacaaaattgtgtgattgactt-tgcaacatcctttctgtttcatattgtattgtcgcatttaatcaatattgaaacaatgaagctgg---- |
178 |
Q |
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| T |
18018691 |
gttggagtcacaaaattgtgtgattgacttctgccacaacatctctgtttcatattgtattgtcgcatttaatcaatagtgaaacaatgaagctggaaat |
18018592 |
T |
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| Q |
179 |
-----------catttgcttgactcatcagataatttcaaactagactagtcattttggatcgacattat |
237 |
Q |
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| T |
18018591 |
tctatctctattatttgcttgaatcatcacacaaattcaaactagactagtcattttggatcgacattat |
18018522 |
T |
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