View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_36 (Length: 272)
Name: NF20758_low_36
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 43474617 - 43474419
Alignment:
| Q |
1 |
ctattaacaaatttacttgtatgattaattttcatcaaacgttggataaattaaccacaattcttccaagattaacctataaaaaactattttgttattt |
100 |
Q |
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| T |
43474617 |
ctattaacaaatttacttgtatgattaattttcatcaatcgtcggataaattaaccacaattcttccaagattaacctataaaaaactattttgttattt |
43474518 |
T |
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| Q |
101 |
tgcacaacatttggtattattatgtgtttgaggagattttgaaagatttagctgtggaaattgattaatgtgattggcgaccctgataaggtataatgt |
199 |
Q |
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| T |
43474517 |
tgcacaacatttggtattattatgtgtttgcggagattttgaaagatttagctgtggaaattgattaatgtgattggcaaccctgatacggtataatgt |
43474419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 252
Target Start/End: Complemental strand, 43484515 - 43484377
Alignment:
| Q |
115 |
tattattatgtgtttga--ggagattttgaaagatttagctgtggaaattgattaatgtgattggcgaccctgataaggtataatgttaaattgaactat |
212 |
Q |
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| T |
43484515 |
tattattatgtgtttgtttggagattttgaaagatttagctatgtgaatt-agtaatgtgattggtgaccttgatacggtttaaagttaaattggattgt |
43484417 |
T |
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| Q |
213 |
acagcaacaacaacgttgtcctaatatgattccaccatgt |
252 |
Q |
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| T |
43484416 |
acagcaacaacatcgttgtcctaatatgattccaccatgt |
43484377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 43474385 - 43474339
Alignment:
| Q |
193 |
ataatgttaaattgaactatacagcaacaacaacgttgtcctaatat |
239 |
Q |
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| T |
43474385 |
ataatgttaaattgaactatacaacaacaacatcgttgttctaatat |
43474339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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