View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_39 (Length: 255)
Name: NF20758_low_39
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 50012106 - 50012352
Alignment:
| Q |
1 |
accaaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtgggcaagtgtttttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
50012106 |
accaaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacatatgttcttctttctaatgtaacgtgggcaagtgttttcc |
50012205 |
T |
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| Q |
101 |
aaatattaaagattgannnnnnnnnnnnnnnnnnnnaaataaagattgaaattttgagcaacttcaatatgtttttgagcaagttaaatcaaaatgttca |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50012206 |
aaatattaaagattgatttttttttcttctttttttaaataaagattgaaattttgagcaacttcaatatatttttgagcaagttaaatcaaaatgttca |
50012305 |
T |
|
| Q |
201 |
tccctgtaatatcaacttcatctaattatgtgcattcacttcttctc |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50012306 |
tccctgtaatatcaacttcatctaattatgtgcattcacttcttctc |
50012352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 42066281 - 42066528
Alignment:
| Q |
1 |
accaaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtgggcaagtgtttttc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
42066281 |
accaaatctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtgggcaaatgttttcc |
42066380 |
T |
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| Q |
101 |
aaatattaaagattgannnnnnnnnnnnnnnnnnnn-aaataaagattgaaattttgagcaacttcaatatgtttttgagcaagttaaatcaaaatgttc |
199 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42066381 |
aaatattaaagattgattttttttttcttctttttttaaataaagattgaaattttgagcaacttcaatatgtttttgagcaagttaaatcaaaatgttc |
42066480 |
T |
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| Q |
200 |
atccctgtaatatcaacttcatctaattatgtgcattcacttcttctc |
247 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42066481 |
atccatgtaatatcaacttcatctaattatgtgcattcacttcttctc |
42066528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 21444349 - 21444106
Alignment:
| Q |
1 |
accaaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtgggcaagtgtttttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| | |
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| T |
21444349 |
accaaacctgtttatatttctttttcattcctctctctctaaaagagcttaagaaatacacatgttcttctttctgaagtaacgtgggcaagtgttttcc |
21444250 |
T |
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| Q |
101 |
aaatattaaagattgannnnnnnnnnnnnnnnnnnnaaataaagattgaaattttgagcaacttcaatatgtttttgagcaagttaaatcaaaatgttca |
200 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21444249 |
aaatattaaagattgatttttttttcttttttt---aaataaagattgaaattttgagcaacttcaatatgtttttgagcaagttaaatcaaaatgttca |
21444153 |
T |
|
| Q |
201 |
tccctgtaatatcaacttcatctaattatgtgcattcacttcttctc |
247 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
21444152 |
tccctgtaatatcaacttcatctaattatctgcattcacttcttctc |
21444106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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