View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_4 (Length: 602)
Name: NF20758_low_4
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_4 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 100 - 450
Target Start/End: Complemental strand, 11991558 - 11991208
Alignment:
| Q |
100 |
gacaggaaaggaatctcattagataaatggtaaatccttacaaacagcagccataatttggtcaggaactttgccttcccaaagcatacaacca-cagaa |
198 |
Q |
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| T |
11991558 |
gacaggaaaggaatttcattagataaatggtaaatccttacaaacagaagccataatttggtcaggaacattggcttcccaaagcttacacccagcagaa |
11991459 |
T |
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| Q |
199 |
agtgagaagctgacaagactacgtgctacagcattacaatctctttcaacaaaaagatacttcaagtattgtctagccttgcaagaacttctatgcagtc |
298 |
Q |
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| T |
11991458 |
agtgctaagctgacaagactatgtgctacagtattgcaatctctttgaacaaa--gataacactagtattctctagccttgcaagaacttctatgcagtc |
11991361 |
T |
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| Q |
299 |
tatgattgaattcatcaattgcatcaggttttgcagcatcgtgtacacaccttactactg-tttctgcatccatctctatgattagattcttgagtt-tt |
396 |
Q |
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| T |
11991360 |
tatgatt-aattcatcagttgcatcaggttttgcagcaccatgtacacaccttactactgatttcagcatccatctctatgattagattcttgagttgac |
11991262 |
T |
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| Q |
397 |
tatgttctgcctgcaacaagcaccaacgcagttccgtggtttcagctactaagg |
450 |
Q |
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| T |
11991261 |
gatgttctgcccacaacaagcaccaccgcagtcccatggtttcagctactaagg |
11991208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 276 - 453
Target Start/End: Complemental strand, 12021576 - 12021402
Alignment:
| Q |
276 |
cttgcaagaacttctatgcagtctatgattgaattcatcaattgcatcaggttttgcagcatcgtgtacacaccttactactgtttctgcatccatctct |
375 |
Q |
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| T |
12021576 |
cttgcaagaacttctatgcaatctatgatt-aattcatcaattgcagcaagttttgcagcaccacgtacacaccttactattgtttcagcatccatctct |
12021478 |
T |
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| Q |
376 |
atgattagattcttgagtttttatgttctgcctgcaacaagcaccaacgcagttccgtggtttcagctactaaggagg |
453 |
Q |
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| T |
12021477 |
atgattagatttttgag--ttgatgttctgcccgcaacaagcaccaccgcagtcccatggtttcagctactaaggagg |
12021402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 12013194 - 12013065
Alignment:
| Q |
7 |
gtgagatgaatcaaattacgccataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctcttattttannnnnnngacagga |
106 |
Q |
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| T |
12013194 |
gtgacatgaatcaaattacaccataatgtgttgccatgaatcatttctaaagatagactagttaacttaaaatctcttttttttt---tttttgacagga |
12013098 |
T |
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| Q |
107 |
aaggaatctcattagataaatggtaaatcctta |
139 |
Q |
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| T |
12013097 |
aaggaatctcattagataaatggtaaatcctta |
12013065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 12024595 - 12024514
Alignment:
| Q |
6 |
agtgagatgaatcaaattacgccataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctctta |
87 |
Q |
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| T |
12024595 |
agtgacatgaatcaagtgatgccataatgtgttgtcatgaatcatttctaaagatagactagttaactgaaaatctctctta |
12024514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 525
Target Start/End: Complemental strand, 12021349 - 12021294
Alignment:
| Q |
470 |
cccatcatgtattaccattagagaaacagcctgcatctacattgatctttataaaa |
525 |
Q |
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| T |
12021349 |
cccatcctgtattaccattagagaaacagcctgcatcaccattcatctttataaaa |
12021294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 11991655 - 11991588
Alignment:
| Q |
14 |
gaatcaaattacgccataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctc |
84 |
Q |
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| T |
11991655 |
gaatcaaattatgtcataatgtg---ccatgaatcatttctgaagatagacttgttaactcaaaatctctc |
11991588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 62653 - 62568
Alignment:
| Q |
310 |
tcatcaattgcatcaggttttgcagcatcgtgtacacaccttactactgtttctgcatccat-ctctatgattagattcttgagtt |
394 |
Q |
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| T |
62653 |
tcatcaattgcaacaggttttgcagcaccatacacacacctaactactgtttcagcatccatgatctatgattaggttcttgagtt |
62568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 394
Target Start/End: Original strand, 3414182 - 3414267
Alignment:
| Q |
310 |
tcatcaattgcatcaggttttgcagcatcgtgtacacaccttactactgtttctgcatccat-ctctatgattagattcttgagtt |
394 |
Q |
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| T |
3414182 |
tcatcaattgcaacaggttttgcagcaccatacacacacctaactactgtttcagcatccatgatctatgattaggttcttgagtt |
3414267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 43497599 - 43497657
Alignment:
| Q |
28 |
cataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctctt |
86 |
Q |
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| T |
43497599 |
cataatatgttatcatgaatcatttctaaagatagattagttaactcaaattctctctt |
43497657 |
T |
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