View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20758_low_40 (Length: 252)

Name: NF20758_low_40
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20758_low_40
NF20758_low_40
[»] chr1 (2 HSPs)
chr1 (98-209)||(45413926-45414033)
chr1 (209-242)||(44404659-44404692)
[»] chr3 (2 HSPs)
chr3 (204-242)||(50736607-50736645)
chr3 (204-242)||(50776210-50776248)
[»] chr6 (3 HSPs)
chr6 (209-242)||(35039094-35039127)
chr6 (209-241)||(18310008-18310040)
chr6 (209-241)||(17936981-17937013)
[»] chr5 (3 HSPs)
chr5 (209-242)||(20337170-20337203)
chr5 (209-242)||(20745702-20745735)
chr5 (209-242)||(17994796-17994829)
[»] chr4 (3 HSPs)
chr4 (209-242)||(21351353-21351386)
chr4 (209-242)||(22118268-22118301)
chr4 (209-242)||(36518420-36518453)
[»] chr2 (1 HSPs)
chr2 (209-242)||(5250322-5250355)
[»] chr8 (1 HSPs)
chr8 (176-212)||(69115-69151)
[»] chr7 (2 HSPs)
chr7 (214-242)||(17470775-17470803)
chr7 (214-242)||(17582411-17582439)


Alignment Details
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 45413926 - 45414033
Alignment:
Q  98 aataatgctcttgaatatatttattgttcagcgagataggagtatatccggtctcatatattaggnnnnnnnnttccttttttaggtttatttaataatt 197  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||        |   |||||||||||||||||||||||    
T  45413926 aataatgctcttgaatat--ttatttttcagcgagataggagtatatccggtctcatatattaggaaaaaaaat--attttttaggtttatttaataatt 45414021  T
Q  198 aatatattttgt 209  Q
    ||||||||||||    
T  45414022 aatatattttgt 45414033  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 44404659 - 44404692
Alignment:
Q  209 tctacttactatattataaaattaaatgcctatg 242  Q
    ||||||||||||||||||||||||||||||||||    
T  44404659 tctacttactatattataaaattaaatgcctatg 44404692  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 50736607 - 50736645
Alignment:
Q  204 ttttgtctacttactatattataaaattaaatgcctatg 242  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  50736607 ttttgtctacttactatattataaaattaaatgtctatg 50736645  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 50776248 - 50776210
Alignment:
Q  204 ttttgtctacttactatattataaaattaaatgcctatg 242  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  50776248 ttttgtctacttactatattataaaattaaatgtctatg 50776210  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 35039094 - 35039127
Alignment:
Q  209 tctacttactatattataaaattaaatgcctatg 242  Q
    ||||||||||||||||||||||||||||||||||    
T  35039094 tctacttactatattataaaattaaatgcctatg 35039127  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 18310008 - 18310040
Alignment:
Q  209 tctacttactatattataaaattaaatgcctat 241  Q
    |||||||||||||||||||||||||||||||||    
T  18310008 tctacttactatattataaaattaaatgcctat 18310040  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 17936981 - 17937013
Alignment:
Q  209 tctacttactatattataaaattaaatgcctat 241  Q
    ||||||| |||||||||||||||||||||||||    
T  17936981 tctacttgctatattataaaattaaatgcctat 17937013  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 20337170 - 20337203
Alignment:
Q  209 tctacttactatattataaaattaaatgcctatg 242  Q
    ||||||||||||||||||||||||||||||||||    
T  20337170 tctacttactatattataaaattaaatgcctatg 20337203  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 20745702 - 20745735
Alignment:
Q  209 tctacttactatattataaaattaaatgcctatg 242  Q
    ||||||||||||||||||||||||||||||||||    
T  20745702 tctacttactatattataaaattaaatgcctatg 20745735  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 17994796 - 17994829
Alignment:
Q  209 tctacttactatattataaaattaaatgcctatg 242  Q
    |||||||||||||||||||| |||||||||||||    
T  17994796 tctacttactatattataaagttaaatgcctatg 17994829  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 21351353 - 21351386
Alignment:
Q  209 tctacttactatattataaaattaaatgcctatg 242  Q
    ||||||||||||||||||||||||||||||||||    
T  21351353 tctacttactatattataaaattaaatgcctatg 21351386  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 22118301 - 22118268
Alignment:
Q  209 tctacttactatattataaaattaaatgcctatg 242  Q
    |||||||||||||||||||||||||||| |||||    
T  22118301 tctacttactatattataaaattaaatgtctatg 22118268  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 36518453 - 36518420
Alignment:
Q  209 tctacttactatattataaaattaaatgcctatg 242  Q
    |||||||||||||||| |||||||||||||||||    
T  36518453 tctacttactatattacaaaattaaatgcctatg 36518420  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 5250322 - 5250355
Alignment:
Q  209 tctacttactatattataaaattaaatgcctatg 242  Q
    ||||||||||||||||||||||||||||||||||    
T  5250322 tctacttactatattataaaattaaatgcctatg 5250355  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 69151 - 69115
Alignment:
Q  176 tttttaggtttatttaataattaatatattttgtcta 212  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  69151 ttttaaggtttatttaataaataatatattttgtcta 69115  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 17470775 - 17470803
Alignment:
Q  214 ttactatattataaaattaaatgcctatg 242  Q
    |||||||||||||||||||||||||||||    
T  17470775 ttactatattataaaattaaatgcctatg 17470803  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 17582439 - 17582411
Alignment:
Q  214 ttactatattataaaattaaatgcctatg 242  Q
    |||||||||||||||||||||||||||||    
T  17582439 ttactatattataaaattaaatgcctatg 17582411  T

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