View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_42 (Length: 243)
Name: NF20758_low_42
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33520155 - 33519929
Alignment:
| Q |
1 |
ttttatctttatgtagcctacaatattctccatgccctttggaactacaaagaaccatttcattcctgtctgcacaaaataaaggaaatcatatcaatat |
100 |
Q |
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| T |
33520155 |
ttttatctttatgtagtctacaatcttctccatgccctttggaactacaaagaaccatttcattcctgtctgcacaaaataaaggaaatcatatcaatat |
33520056 |
T |
|
| Q |
101 |
ttatgtttattacaatcataaccgattatcaaataattgttcatgaggtctcagcatactggtaagagccagaccgtgtaatctcaaggcataaagttca |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33520055 |
ttatgttcattacaatcataaccgattatcaaataattgttcatgaggtctcagcatactggtaagagccagaccgtgtaatctcaaggcataaagttca |
33519956 |
T |
|
| Q |
201 |
aatgttatcagtgacagttgtaaattg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
33519955 |
aatgttatcagtgacagttgtaaattg |
33519929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33495900 - 33496123
Alignment:
| Q |
1 |
ttttatctttatgtagcctacaatattctccatgccctttggaactacaaagaaccatttcattcctgtctgcacaaaataaaggaaatcatatcaatat |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| | ||||||||||||| | ||| ||| |||||||||||||||| |
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| T |
33495900 |
ttttatctttatgtagtctacaatcttctccatgccctttggaaccacaaagaaccttggcattcctgtctgctctaaacaaaagaaatcatatcaatat |
33495999 |
T |
|
| Q |
101 |
ttatgtttattacaatcataaccgattatcaaataattgttcatgaggtctcagcatactggtaagagccagaccgtgtaatctcaaggcataaagttca |
200 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||| | | ||| | ||||||||| |||||||||| |||||| ||| ||||||| |
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| T |
33496000 |
ttatgttcattacaatcgtaaccgattatcaaataattgttcatgagatgtaagctcaacggtaagagcttgaccgtgtaacctcaagacatgaagttca |
33496099 |
T |
|
| Q |
201 |
aatgttatcagtgacagttgtaaa |
224 |
Q |
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||| |||||| ||||||||||||| |
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| T |
33496100 |
aatcttatcaatgacagttgtaaa |
33496123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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