View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_45 (Length: 243)
Name: NF20758_low_45
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_45 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 67 - 243
Target Start/End: Original strand, 7874509 - 7874685
Alignment:
| Q |
67 |
agcagcatcggaagaaaattatgaaatccctatacttccgaacaatctcgccatgacttccaaagccatgcaagttgactaaatattattaagtgtaata |
166 |
Q |
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| T |
7874509 |
agcagcatcggaagaaaattatgaaatccctatacttccgaacaatctcgccatgacttccaaagccatgcaagttgactaaatattattaagtgtaata |
7874608 |
T |
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| Q |
167 |
gtgattgtgtaattaaacttcagccatattttaactattataataataatacccctgcatgtgaaattatgcttatt |
243 |
Q |
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| T |
7874609 |
gtgattgtgtaattaaacttcagccatattttaactattataataataatacccctgcatgtgaaattatgcttatt |
7874685 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 7874441 - 7874490
Alignment:
| Q |
19 |
atggaagccgaagcaagtctctacggaatcactctgacagtgcttgacag |
68 |
Q |
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| T |
7874441 |
atggaagccgaagcaagtctctacggaatcactccgacagtgcttgacag |
7874490 |
T |
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