View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20758_low_48 (Length: 238)

Name: NF20758_low_48
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20758_low_48
NF20758_low_48
[»] chr4 (2 HSPs)
chr4 (2-227)||(42677385-42677599)
chr4 (156-210)||(45873296-45873350)
[»] chr5 (2 HSPs)
chr5 (154-227)||(26331014-26331087)
chr5 (148-184)||(40681092-40681128)
[»] chr2 (3 HSPs)
chr2 (148-214)||(40900370-40900436)
chr2 (148-216)||(6705684-6705752)
chr2 (72-120)||(40900464-40900512)
[»] chr7 (1 HSPs)
chr7 (155-222)||(21590439-21590506)
[»] chr1 (1 HSPs)
chr1 (148-216)||(15496062-15496130)
[»] scaffold0092 (1 HSPs)
scaffold0092 (161-227)||(23348-23414)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 42677385 - 42677599
Alignment:
Q  2 cgtggtaccttcagaacatgttcacgccatgtttgttttttaagtgtttgtaccgattctattatgaaccacgctagccatcaattgaaaaatattgtaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42677385 cgtggtaccttcagaacatgttcacgccatgtttgttttttaagtgtttgtaccgattctattgtgaaccacgctagccatcaattgaaaaatattgtaa 42677484  T
Q  102 ggggaggttaattcatacagctttgtctaannnnnnnnnnnnnnnnatgtgacggtgagttttgtttgtggtgatgatgttgaagagcttgtatgttgat 201  Q
    ||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42677485 ggggaggttaattcatacagctttgtctaa-----------tttttatgtgacggtgagttttgtttgtggtgatgatgttgaagagctcgtatgttgat 42677573  T
Q  202 ttttggttgtgttggtctgtgctgct 227  Q
    |||||||||||||||| |||| ||||    
T  42677574 ttttggttgtgttggtttgtggtgct 42677599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 45873350 - 45873296
Alignment:
Q  156 gtgagttttgtttgtggtgatgatgttgaagagcttgtatgttgatttttggttg 210  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  45873350 gtgagttttgtttgtggtgatgatgttgaggagctcgtatgttgctttttggttg 45873296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 26331014 - 26331087
Alignment:
Q  154 cggtgagttttgtttgtggtgatgatgttgaagagcttgtatgttgatttttggttgtgttggtctgtgctgct 227  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| |||| ||||    
T  26331014 cggtgagttttgtttgtggtgatgatgttgaggagctcgtatgttgctttttagttgtgttggtttgtggtgct 26331087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 40681128 - 40681092
Alignment:
Q  148 atgtgacggtgagttttgtttgtggtgatgatgttga 184  Q
    ||||| || ||||||||||||||||||||||||||||    
T  40681128 atgtggcgatgagttttgtttgtggtgatgatgttga 40681092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 40900436 - 40900370
Alignment:
Q  148 atgtgacggtgagttttgtttgtggtgatgatgttgaagagcttgtatgttgatttttggttgtgtt 214  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||    
T  40900436 atgtggcggtgagttttgtttgtggtgatgatgttgaggagctcgtaagttgttttttggttgtgtt 40900370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 6705752 - 6705684
Alignment:
Q  148 atgtgacggtgagttttgtttgtggtgatgatgttgaagagcttgtatgttgatttttggttgtgttgg 216  Q
    ||||| |||||||||||||||||||||||||||||||  |||| ||| |||| ||||| ||| ||||||    
T  6705752 atgtggcggtgagttttgtttgtggtgatgatgttgagaagctcgtacgttgtttttttgttatgttgg 6705684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 40900512 - 40900464
Alignment:
Q  72 acgctagccatcaattgaaaaatattgtaaggggaggttaattcataca 120  Q
    |||||||||||||||||  |||||||| || |||||||| |||||||||    
T  40900512 acgctagccatcaattgggaaatattgcaaagggaggttcattcataca 40900464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 21590439 - 21590506
Alignment:
Q  155 ggtgagttttgtttgtggtgatgatgttgaagagcttgtatgttgatttttggttgtgttggtctgtg 222  Q
    ||||| |||||||||||||||||||||||| ||||| ||| |||| |||| ||||||||| |||||||    
T  21590439 ggtgatttttgtttgtggtgatgatgttgaggagctcgtaggttgtttttcggttgtgtttgtctgtg 21590506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 15496130 - 15496062
Alignment:
Q  148 atgtgacggtgagttttgtttgtggtgatgatgttgaagagcttgtatgttgatttttggttgtgttgg 216  Q
    ||||| |||||||||||||||||||||||||||||||  |||| ||| |||| ||||| ||| ||||||    
T  15496130 atgtggcggtgagttttgtttgtggtgatgatgttgagaagctcgtacgttgtttttttgttatgttgg 15496062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 23414 - 23348
Alignment:
Q  161 ttttgtttgtggtgatgatgttgaagagcttgtatgttgatttttggttgtgttggtctgtgctgct 227  Q
    |||||||||||||| ||||||||| ||||| ||| |||| ||||||||| |||| || |||| ||||    
T  23414 ttttgtttgtggtgttgatgttgaggagctcgtaggttggtttttggttatgttcgtttgtggtgct 23348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University