View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_50 (Length: 233)
Name: NF20758_low_50
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 50011892 - 50012075
Alignment:
| Q |
16 |
aaaccagaggtagatttatttattttagttacaaccatgttcatagttttaaaaccaggtgccttttcacatgggaaaggtgaaaatcttcccatgatgg |
115 |
Q |
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| T |
50011892 |
aaaccagaggtagatttatttattttagttacaaccatattcatagttttaaaaccaggtgccttttcatatgggaaaggtgaaaatcttcccatgatgg |
50011991 |
T |
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| Q |
116 |
accacatgtgattataggttagatcttgaggttgtattaaattttattatatgtctcccacaccataacatctcttttccattc |
199 |
Q |
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| T |
50011992 |
accacatgtgattataagttagatcttgaggttgaattaaattttattatatgtctcccacaccatagcatcttttttccattc |
50012075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 21444515 - 21444389
Alignment:
| Q |
73 |
ggtgccttttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtctc |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21444515 |
ggtgccttttcacatgggaaaggtgaaaatcttcccatgataaaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtctc |
21444416 |
T |
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| Q |
173 |
ccacaccataacatctcttttccattc |
199 |
Q |
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| T |
21444415 |
ccacaccatagcatctcttttccattc |
21444389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 42067137 - 42067027
Alignment:
| Q |
72 |
aggtgccttttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtct |
171 |
Q |
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| T |
42067137 |
aggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagattttgaggttgtattaaattttatcatatgtct |
42067038 |
T |
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| Q |
172 |
cccacaccata |
182 |
Q |
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| T |
42067037 |
cccacaccata |
42067027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 21443508 - 21443610
Alignment:
| Q |
80 |
tttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtctcccacacc |
179 |
Q |
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| T |
21443508 |
tttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagattttgaggttgtattaaattttatcatatgtctcccacacc |
21443607 |
T |
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| Q |
180 |
ata |
182 |
Q |
| |
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||| |
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| T |
21443608 |
ata |
21443610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 42066144 - 42066250
Alignment:
| Q |
93 |
aggtgaaaatcttcccatgatggaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtctcccacaccataacatctcttt |
192 |
Q |
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| T |
42066144 |
aggtgaaaatcttctcatgatagaccacatgtgattatagattagatcttgaggttgtattaaattttattatatgtctcccacaccatagcatctcttt |
42066243 |
T |
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| Q |
193 |
tccattc |
199 |
Q |
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||||||| |
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| T |
42066244 |
tccattc |
42066250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 50012958 - 50012848
Alignment:
| Q |
72 |
aggtgccttttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtct |
171 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |
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| T |
50012958 |
aggtgccatttcacatgggaaaggtgaaaatcttcccatgatagaccacatgtgattataggttagattttgaggttgaattaaattttatcatatgtct |
50012859 |
T |
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| Q |
172 |
cccacaccata |
182 |
Q |
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| T |
50012858 |
cccacaccata |
50012848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 9124445 - 9124408
Alignment:
| Q |
72 |
aggtgccttttcacatgggaaaggtgaaaatcttccca |
109 |
Q |
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| T |
9124445 |
aggtgccatttcacatgggaaaggtgaaaaccttccca |
9124408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 5929190 - 5929227
Alignment:
| Q |
72 |
aggtgccttttcacatgggaaaggtgaaaatcttccca |
109 |
Q |
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| T |
5929190 |
aggtgccatttcacatgggaaaggtgaaaaccttccca |
5929227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 42843884 - 42843921
Alignment:
| Q |
72 |
aggtgccttttcacatgggaaaggtgaaaatcttccca |
109 |
Q |
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| T |
42843884 |
aggtgccatttcacatgggaaaggtgaaaaccttccca |
42843921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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