View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20758_low_55 (Length: 211)
Name: NF20758_low_55
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_55 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 44705694 - 44705873
Alignment:
| Q |
13 |
gagaagaagagagaggttttgagaactgtgtaatgaatctcttctttgaagacgtagttaccttcttcttgtaactctttcatattttctgaggcagagt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44705694 |
gagaagaagagagaggttttgagaactgtgtaatgaatctcttctttgaagacgtagttaccttcttcttgtaactctttcatattttctgcggcagagt |
44705793 |
T |
|
| Q |
113 |
cggaatccatacaaagggtcatttcaaagatggaaaatgggaatggaaagtttggagttaaggttttgacatgtgaatgt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44705794 |
cggaatccatacaaagggtcatttcaaagatggaaaatgggaatggaaagtttggagttaaggttttgacatgtgaatgt |
44705873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 44715665 - 44715713
Alignment:
| Q |
16 |
aagaagagagaggttttgagaactgtgtaatgaatctcttctttgaaga |
64 |
Q |
| |
|
||||| |||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44715665 |
aagaaaagagtggttttaagaactgtgtaatgaatctcttctttgaaga |
44715713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University