View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_8 (Length: 515)
Name: NF20758_low_8
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 221 - 511
Target Start/End: Complemental strand, 48698469 - 48698182
Alignment:
| Q |
221 |
tacaattgtattgtcaacattcattcattcattatttatttttggctctaatcaacattcattctttacaacatcacgtgtttgcagccattttagaatt |
320 |
Q |
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| T |
48698469 |
tacaattgtattgtcaacattcattcatt----atttatttttggctctaatcaacattcattctttacaacatcacatgtttgcagccattttagaatt |
48698374 |
T |
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| Q |
321 |
ttccaaattcgttgtggaacttgctctcctataacataactcctacatgttgtatttttgggtgcaaaacatactag-nnnnnnnatccatatagaattt |
419 |
Q |
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| T |
48698373 |
ttccaaattcgttgtggaacttgctctcctataacataactcctacatgttgtatttttgggtgcaaaacatactagttttttttatccatatagaattt |
48698274 |
T |
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| Q |
420 |
catataactattaagagaaatagttcatatagtaaataaatgcaataaaatatagattccgattgatgttaacagtactgattcttctcagt |
511 |
Q |
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| T |
48698273 |
catataactattaagagaaaaagttcatatagtaaataaatgcaataaaatatagattccgattgatgttaacagtactgattcttctcagt |
48698182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 48698583 - 48698553
Alignment:
| Q |
19 |
taggggtcctatcctaaaatagattgtcctt |
49 |
Q |
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| T |
48698583 |
taggggtcctatcctaaaatagattgtcctt |
48698553 |
T |
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