View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_9 (Length: 508)
Name: NF20758_low_9
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Original strand, 29768962 - 29769432
Alignment:
| Q |
18 |
acactcactctctcattcttcttctcagaagcgaaatcaaaatccgttagagagagaaaacaaaaatggcagcttccgatggaagcgagtactttgaaat |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29768962 |
acactcgctctctcattcttcttctcagaagcgaaatcaaaatccgttagagagagaaaacaaaaatggcagcttccgatggaagcgagtacttcgaaat |
29769061 |
T |
|
| Q |
118 |
cggatcaatcggaagcgagagttttgcgagagcgtcgaatgcagaatgggtggaggaagacgaagaggagcttcattgggcggcgctttcacgtttaccg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29769062 |
cggatcaatcggaagcgagagttttgcgagagcgtcgaatgcagaatgggtggaggaagacgaagaggagcttcattgggcggcgctttcacgtttaccg |
29769161 |
T |
|
| Q |
218 |
tcgcagaaacgcatcaactttgccgtcctccgtgcttcatcttcccgtcaaccttcaaaggaaaatgccgccgagaatttagtcgatgtgagaaaattga |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29769162 |
tcgcagaaacgcatcaacttcgccgtcctccgtgcttcatcttcccgtcaaccttcaaaggaaaatgccggcgagaatttagtcgatgtgagaaaattga |
29769261 |
T |
|
| Q |
318 |
atcggtttaatcgtgaactcgtcgttaaaaaagcactcgctacaaatgatcaagataattataagcttctctccgctgttaaagaacgcctcaataggtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29769262 |
atcggtttaatcgtgaactcgtcgttaaaaaagcactcgctacaaatgatcaagataattataagcttctctccgccgttaaagaacgcctcaataggtt |
29769361 |
T |
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| Q |
418 |
cgttgttcatgtctctatcatcgttatagatctttatgttaatgttgtatccggtgtctgtagctaacggtatc |
491 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| |
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| T |
29769362 |
cgttgttcatgtctctatcatcgttatagatctgtatgtcaatgttgtat---gtgtctgtagctaacggtatc |
29769432 |
T |
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