View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_high_11 (Length: 405)
Name: NF20759_high_11
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 43527356 - 43527735
Alignment:
| Q |
18 |
aaagtattattagttgtggatttgtgactggtgactg--ataagtccatgcatgcatgctcgtaaaatgccaat----aagatgttgactatgaaattgt |
111 |
Q |
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| T |
43527356 |
aaagtattattagttgtggatttgtgactggtgactgcgataagtccatgcatgcatgctcgtaaaatgccaattaataagatgttgactatgaaattgt |
43527455 |
T |
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| Q |
112 |
tgctagtatgaatgatggaatggttggtgcaaagctaacaaatat------agttgagtttctgctatcaattaatatgatgtgggactcaaggactgag |
205 |
Q |
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| T |
43527456 |
tg-tagtatgaatgatggaatggttggtgcaaagctaacaaatatatatatagttgagtttctgctatcaattaatatgatgtgggactcaaggactgag |
43527554 |
T |
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| Q |
206 |
gtaacaaatctgtgacgtgtagtttcttatagaaaactgatatttgcttcgatgtatcttgcatggtgagcca-catccaatccttttattttctataat |
304 |
Q |
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| T |
43527555 |
gtaacaaatctgtgacgtgtagtttcttatagaaaactgatatttgcttcgatgtatctttcatggcgagccatcatccaatccttttattttct----- |
43527649 |
T |
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| Q |
305 |
caagcatgtaaataaaatgtctgtttatccaaccagaagagctttatttatcacatga---attattcatttgatagtggatgcctatgat |
392 |
Q |
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| T |
43527650 |
-----atgtaaataaaatgtctgtttatccaaccagaagagctttatttatcacatgaattattattcatttgatagtggatgcctatgat |
43527735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 43542722 - 43542874
Alignment:
| Q |
70 |
catgctcgtaaaatgccaat-----aagatgttgactatgaaattgttgctagtatgaatgatggaatggttggtgcaaagctaacaaatatagttga-g |
163 |
Q |
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| T |
43542722 |
catgctcgtaaaaagccaattgctgaagatgtagactatgaaattgttgctagtatgactgatggaatggttggtgcagagctagctaacatagttgagg |
43542821 |
T |
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| Q |
164 |
tttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtga |
220 |
Q |
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| T |
43542822 |
ttgctgctatc----aatatgatgcgggactcgaggaccgaggtaataaatccgtga |
43542874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 43543075 - 43543154
Alignment:
| Q |
294 |
ttttctataatcaagcatgtaaataaaatgtctgtttatccaaccagaagagctttatttatcacatgaattattcattt |
373 |
Q |
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| T |
43543075 |
ttttctaaaatcaagcatgcaaataaaaggtctgtttatccaaccataagtgctttatttattgcatgaattattcattt |
43543154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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