View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20759_high_16 (Length: 367)

Name: NF20759_high_16
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20759_high_16
NF20759_high_16
[»] chr6 (4 HSPs)
chr6 (9-350)||(15668266-15668590)
chr6 (11-149)||(26332526-26332664)
chr6 (199-351)||(26332252-26332403)
chr6 (278-350)||(14637240-14637313)
[»] chr8 (9 HSPs)
chr8 (195-350)||(24957325-24957480)
chr8 (195-350)||(18175693-18175848)
chr8 (196-350)||(15587755-15587909)
chr8 (204-350)||(10347676-10347821)
chr8 (282-350)||(24971870-24971937)
chr8 (279-334)||(19793344-19793399)
chr8 (278-350)||(34546580-34546652)
chr8 (279-350)||(9453401-9453472)
chr8 (147-186)||(15587992-15588031)
[»] chr4 (23 HSPs)
chr4 (195-350)||(44743937-44744092)
chr4 (195-350)||(13092005-13092160)
chr4 (18-149)||(13091716-13091847)
chr4 (18-149)||(44743649-44743780)
chr4 (195-350)||(22592025-22592179)
chr4 (196-350)||(10154712-10154866)
chr4 (9-149)||(22591728-22591868)
chr4 (195-350)||(11306820-11306975)
chr4 (9-113)||(13091610-13091714)
chr4 (199-350)||(4527497-4527648)
chr4 (195-314)||(39749630-39749749)
chr4 (278-350)||(41793081-41793153)
chr4 (199-350)||(15210659-15210804)
chr4 (292-350)||(38991575-38991633)
chr4 (285-350)||(31429715-31429780)
chr4 (195-309)||(51923609-51923720)
chr4 (285-350)||(23200999-23201064)
chr4 (147-186)||(13091885-13091924)
chr4 (147-186)||(44743818-44743857)
chr4 (147-186)||(10154585-10154624)
chr4 (147-186)||(22591906-22591945)
chr4 (279-350)||(41397410-41397481)
chr4 (55-101)||(23628382-23628428)
[»] scaffold0438 (3 HSPs)
scaffold0438 (195-350)||(3116-3271)
scaffold0438 (78-149)||(2887-2958)
scaffold0438 (147-186)||(2996-3035)
[»] chr1 (7 HSPs)
chr1 (195-350)||(38835684-38835839)
chr1 (196-350)||(32605460-32605614)
chr1 (195-350)||(16067771-16067925)
chr1 (278-351)||(6577387-6577460)
chr1 (66-149)||(38835441-38835524)
chr1 (147-186)||(32605340-32605379)
chr1 (147-186)||(38835559-38835598)
[»] chr2 (7 HSPs)
chr2 (196-350)||(21022162-21022315)
chr2 (199-350)||(10257481-10257632)
chr2 (278-350)||(17974739-17974811)
chr2 (288-350)||(17982419-17982481)
chr2 (278-334)||(45297099-45297155)
chr2 (147-186)||(21022399-21022438)
chr2 (278-350)||(13560975-13561045)
[»] scaffold0548 (1 HSPs)
scaffold0548 (195-350)||(3598-3753)
[»] chr5 (4 HSPs)
chr5 (195-350)||(40659085-40659238)
chr5 (305-350)||(31955698-31955743)
chr5 (311-350)||(31956489-31956528)
chr5 (278-342)||(27132285-27132349)
[»] scaffold2117 (1 HSPs)
scaffold2117 (195-348)||(888-1040)
[»] chr3 (10 HSPs)
chr3 (195-350)||(24642591-24642744)
chr3 (195-349)||(52959084-52959238)
chr3 (66-149)||(36332072-36332155)
chr3 (282-350)||(36332383-36332451)
chr3 (237-348)||(25706068-25706179)
chr3 (147-186)||(36332193-36332232)
chr3 (199-251)||(25705999-25706051)
chr3 (195-238)||(36332313-36332356)
chr3 (278-350)||(46105811-46105883)
chr3 (278-348)||(25164718-25164788)
[»] chr7 (10 HSPs)
chr7 (278-350)||(2406128-2406200)
chr7 (282-350)||(9789417-9789485)
chr7 (195-251)||(9789499-9789555)
chr7 (285-348)||(28107614-28107677)
chr7 (288-350)||(38796051-38796113)
chr7 (72-145)||(10094926-10094999)
chr7 (147-186)||(9789636-9789675)
chr7 (147-186)||(10094269-10094308)
chr7 (278-334)||(3301197-3301253)
chr7 (278-350)||(39511338-39511410)
[»] scaffold1743 (1 HSPs)
scaffold1743 (195-251)||(1342-1397)
[»] scaffold0198 (1 HSPs)
scaffold0198 (55-101)||(15726-15772)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 350
Target Start/End: Complemental strand, 15668590 - 15668266
Alignment:
Q  9 gagaagaagaaagaaacattaatgaagatttgagtacatataatttaagagtacaagatgggagctacatggatagagttagaaataaaatagccactaa 108  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  15668590 gagaagaagaaagaaacattaatgaagattcaagtacatataatttaagagtacaagatgggagctatatggatagagctagaaattaaatagccactaa 15668491  T
Q  109 gttgttggaaaataaaaatcgttcaaatttatgatgtgttaatttatgataatgttttatataataatttataaatttataaactctttgtaataaaatc 208  Q
    |||||| ||||| ||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15668490 gttgtttgaaaacaaaaatcgtt-----------------aatttatgataatgttttatataataatttataaatttataaactctttgtaataaaatc 15668408  T
Q  209 tcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaactttaacttcaact 308  Q
    || |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||    
T  15668407 tcgaagctcttttaaaaatattttgccaaacagattttaacttgaaggtattaattaagttgaaaaaaacaacaaatatcaaacaactttaacttcaact 15668308  T
Q  309 tcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  15668307 tcaaagttttaattttcaactttattctaaaagtgattttta 15668266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 26332664 - 26332526
Alignment:
Q  11 gaagaagaaagaaacattaatgaagatttgagtacatataatttaagagtacaagatgggagctacatggatagagttagaaataaaatagccactaagt 110  Q
    ||||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  26332664 gaagaagaaagaaacattactgaagattcgagttcatacaatttaagagtacaagatgtgagctacatggatagagctagaaatcaaatagccactaagt 26332565  T
Q  111 tgttggaaaataaaaatcgttcaaatttatgatgtgtta 149  Q
    |||||||| | ||||||||||||| ||||||||||||||    
T  26332564 tgttggaagacaaaaatcgttcaagtttatgatgtgtta 26332526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 199 - 351
Target Start/End: Complemental strand, 26332403 - 26332252
Alignment:
Q  199 taataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaacttt 298  Q
    ||||||||||||||| ||||||||||||||||||   ||||| |||| ||||| ||| |   ||||||||||       |||||||||||||||||||||    
T  26332403 taataaaatctcaaaactcttttaaaaatattttacaaaacaaattttaacttaaag-tgcaaattaagttggaaaaaacaacaaataccaaacaacttt 26332305  T
Q  299 aacttcaacttcaaagttttgattttcaactttattctaaaagtgacttttat 351  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||    
T  26332304 aacttcagcttcaaagttttaattttcaactttattctaaaagtaacttttat 26332252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 14637313 - 14637240
Alignment:
Q  278 caacaaataccaaacaactttaacttc-aacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||    
T  14637313 caacaaataccaaacaactttaacttctaacttcaaagttttaatttttaactttattctaaaagtgactttta 14637240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 195 - 350
Target Start/End: Original strand, 24957325 - 24957480
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||| |||||||||||       |||||||||||||||||    
T  24957325 tttgtaacaaaatctcaaagctcttttaaaaatattttgccaaacagattttaacttaaaagtactaattaagttgaaaaaaacaacaaataccaaacaa 24957424  T
Q  295 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24957425 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 24957480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 195 - 350
Target Start/End: Complemental strand, 18175848 - 18175693
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||        |||||||||||||| ||    
T  18175848 tttgtaataaaatcgcaaagctcttttaaaaatattttgccaaacagattttaacttaaaagtattaattaagttaaaaaaaacaacaaataccaaataa 18175749  T
Q  295 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18175748 ttttaacttcaacttcaaagttttaattttcaactttattctaaaagtgactttta 18175693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 196 - 350
Target Start/End: Complemental strand, 15587909 - 15587755
Alignment:
Q  196 ttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaac 295  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||| |||| ||||| || ||| ||||||||||        ||||||||||||||||||    
T  15587909 ttgtaataaaatctcaaagttcttttaaaagtattttgccaaacaaattttaacttaaaagtactaattaagttaaaaaaaacaacaaataccaaacaac 15587810  T
Q  296 tttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15587809 tttaacttcaacttcaaagttttaattttcaactttattctaaaagtgactttta 15587755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 204 - 350
Target Start/End: Original strand, 10347676 - 10347821
Alignment:
Q  204 aaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaactttaactt 303  Q
    |||||||||||||||||||||||||||||  |||  |||||| ||||| ||  |  |||||||||||       ||| |||||||||| || ||||||||    
T  10347676 aaatctcaaagctcttttaaaaatattttaccaataagattttaacttaaaa-tgctaattaagttgaaaaaaacaataaataccaaataattttaactt 10347774  T
Q  304 caacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  10347775 caacttcaaagttttaattttcaactttattctaaaagtgactttta 10347821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 24971870 - 24971937
Alignment:
Q  282 aaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||||||||||||||||| ||||| |||||||| ||||| ||||||||| ||||||| |||||||    
T  24971870 aaataccaaacaactttaactttaacttaaaagtttt-attttgaactttattttaaaagtaactttta 24971937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 19793344 - 19793399
Alignment:
Q  279 aacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttatt 334  Q
    ||||||| |||||||| |||||||| ||||| |||||||| |||||||||||||||    
T  19793344 aacaaatgccaaacaaatttaactttaacttaaaagttttaattttcaactttatt 19793399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 34546652 - 34546580
Alignment:
Q  278 caacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||| ||||||||||||||||  ||||  ||||| | ||||| ||||||||||| ||||| |||||||    
T  34546652 caacaaatagcaaacaactttaactttcacttttaagttctaatttttaactttattcttaaagtaactttta 34546580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 9453401 - 9453472
Alignment:
Q  279 aacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||| ||||||||||||||||  ||||  ||||| | ||||| ||||||||||| ||||| |||||||    
T  9453401 aacaaatagcaaacaactttaactttcacttttaagttctaatttttaactttattcttaaagtaactttta 9453472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 15588031 - 15587992
Alignment:
Q  147 ttaatttatgataatgttttatataataatttataaattt 186  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  15588031 ttaatttatgataatattttacataataatttataaattt 15587992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 195 - 350
Target Start/End: Original strand, 44743937 - 44744092
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||| |||||||||||       |||||||||||||||||    
T  44743937 tttgtaataaaatctcaaagctcttttaaaaatattttgccaaacaaatttgaacttaaaagtactaattaagttgaaaaaaacaacaaataccaaacaa 44744036  T
Q  295 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44744037 ctttaacttcaacttcaaagttttaattttcaactttattctaaaagtgactttta 44744092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 195 - 350
Target Start/End: Original strand, 13092005 - 13092160
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||| |||||||||||       |||||||||||||||||    
T  13092005 tttgtaataaaatctcaaagctcttttaaaaatattttgccaaacaaatttgaacttaaaagtactaattaagttgaaaaaaacaacaaataccaaacaa 13092104  T
Q  295 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  13092105 ctttaacttcaacttcaaaattttaattttcaactttattctaaaagtgactttta 13092160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 13091716 - 13091847
Alignment:
Q  18 aaagaaacattaatgaagatttgagtacatataatttaagagtacaagatgggagctacatggatagagttagaaataaaatagccactaagttgttgga 117  Q
    ||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  13091716 aaagaaacattaatgaagattcgagttcaaataatttaagagtacaagatgggagctacatggatagagctagaaatcgaatagccactaagttgttgga 13091815  T
Q  118 aaataaaaatcgttcaaatttatgatgtgtta 149  Q
    ||| ||||||||||||| ||||||||||||||    
T  13091816 aaacaaaaatcgttcaagtttatgatgtgtta 13091847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 44743649 - 44743780
Alignment:
Q  18 aaagaaacattaatgaagatttgagtacatataatttaagagtacaagatgggagctacatggatagagttagaaataaaatagccactaagttgttgga 117  Q
    ||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  44743649 aaagaaacattaatgaagattcgagttcaaataatttaagagtacaagatgggagctacatggatagagctagaaatcgaatagccactaagttgttgga 44743748  T
Q  118 aaataaaaatcgttcaaatttatgatgtgtta 149  Q
    ||| ||||||||||||| ||||||||||||||    
T  44743749 aaacaaaaatcgttcaagtttatgatgtgtta 44743780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 195 - 350
Target Start/End: Original strand, 22592025 - 22592179
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||| || ||| |||||||||||       |||||||||||||||||    
T  22592025 tttgtaataaaatctcaaaactcttttaaatatattttgccaaacagattttaacttaaaagtactaattaagttgaaaaaaacaacaaataccaaacaa 22592124  T
Q  295 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  22592125 ctttaacttcaac-tcaaagttttaattttcaactttattctaaaagtgactttta 22592179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 196 - 350
Target Start/End: Original strand, 10154712 - 10154866
Alignment:
Q  196 ttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaac 295  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||| |||| ||||| || ||| |||||||||||       ||||||||||||||||||    
T  10154712 ttgtaataaaatttcaaagctcttttaaaagtattttgccaaacaaattttaacttaaaagtactaattaagttgaaaaaaacaacaaataccaaacaac 10154811  T
Q  296 tttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  10154812 tttaacttcaacttcaaagttttaattttcaactttattctaaaagtgattttta 10154866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 22591728 - 22591868
Alignment:
Q  9 gagaagaagaaagaaacattaatgaagatttgagtacatataatttaagagtacaagatgggagctacatggatagagttagaaataaaatagccactaa 108  Q
    ||||||||||||||||||  | ||||||||  ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||    
T  22591728 gagaagaagaaagaaacaccactgaagattcaagttcatataatttaagagtacaagatgggagccacatggatagagctagaaatcaaatagccactaa 22591827  T
Q  109 gttgttggaaaataaaaatcgttcaaatttatgatgtgtta 149  Q
    ||||||||||||  |||||| ||||| ||||| ||||||||    
T  22591828 gttgttggaaaacgaaaatcattcaagtttataatgtgtta 22591868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 195 - 350
Target Start/End: Original strand, 11306820 - 11306975
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||||||||||||||||| |||||||| |||||||  ||  ||||||| ||||| || ||| |||||||||||       |||||||||||||||||    
T  11306820 tttgtaataaaatctcaaagcacttttaaacatattttaccacccagattttaacttaaaagtactaattaagttggaaaaaacaacaaataccaaacaa 11306919  T
Q  295 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||    
T  11306920 ctttaacttcaacttcaaagttttgattttcaacttcattctaaaattaactttta 11306975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 13091610 - 13091714
Alignment:
Q  9 gagaagaagaaagaaacattaatgaagatttgagtacatataatttaagagtacaagatgggagctacatggatagagttagaaataaaatagccactaa 108  Q
    |||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||    
T  13091610 gagaagaagaaagaaacattaatgaagattcgagttcaaataatttaagagtacaagatgggagctacatggatagagctagaaatcgaatagccactaa 13091709  T
Q  109 gttgt 113  Q
    |||||    
T  13091710 gttgt 13091714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 199 - 350
Target Start/End: Complemental strand, 4527648 - 4527497
Alignment:
Q  199 taataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaacttt 298  Q
    ||||||||||||||| ||||||||||||||||||  ||||| ||||| ||||| || ||| |||||||||||       || ||||||||||||||||||    
T  4527648 taataaaatctcaaaactcttttaaaaatattttaccaaactgatttcaacttaaaagtactaattaagttggaaaaaacaccaaataccaaacaacttt 4527549  T
Q  299 aacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||| | ||| |||||| | ||||||||||||||||||||||| |||||||    
T  4527548 aactttacctttaaagttgtaattttcaactttattctaaaagtaactttta 4527497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 39749749 - 39749630
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| ||||  |||| || ||| |||||||||||       |||||||||||||||||    
T  39749749 tttgtaataaaatctcaaagctcttttaaaaatattttaccaaacaaattttgacttaaaagtactaattaagttggaaaaaacaacaaataccaaacaa 39749650  T
Q  295 ctttaacttcaacttcaaag 314  Q
    ||||||||| ||| ||||||    
T  39749649 ctttaactttaacctcaaag 39749630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 41793081 - 41793153
Alignment:
Q  278 caacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  41793081 caacaaataccatgcaactttaacttcaacttcaaagttttaattttcaactttattctaaaagtaactttta 41793153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 15210659 - 15210804
Alignment:
Q  199 taataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaacttt 298  Q
    ||||||||||||||| ||||||||||||||||||  ||||| ||||| ||||| || ||| |||||||||||       || ||||||||||||||||||    
T  15210659 taataaaatctcaaaactcttttaaaaatattttaccaaactgatttcaacttaaaagtactaattaagttggaaaaaacaccaaataccaaacaacttt 15210758  T
Q  299 aacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
          ||||| |||||| | ||||||||||||||||||||||| |||||||    
T  15210759 ------aactttaaagttgtaattttcaactttattctaaaagtaactttta 15210804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 38991575 - 38991633
Alignment:
Q  292 caactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  38991575 caacttcaacttcaacttcaaagttttaattttcatctttattctaaaagtgactttta 38991633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 31429780 - 31429715
Alignment:
Q  285 taccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||||||||| || || |||||||| ||||||||||||||||||||||| |||||||    
T  31429780 taccaaacaactttaactttaatttaaaagttttaattttcaactttattctaaaagtaactttta 31429715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 51923720 - 51923609
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||||||||||||||| ||  ||||||||||||||  ||| ||||||| ||||| ||  || |||||||||||       |||||||||||||||||    
T  51923720 tttgtaataaaatctcaaaact--tttaaaaatattttaccaatcagattttaacttaaaa-tactaattaagttgaaaaaaacaacaaataccaaacaa 51923624  T
Q  295 ctttaacttcaactt 309  Q
    |||||||||||||||    
T  51923623 ctttaacttcaactt 51923609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 23201064 - 23200999
Alignment:
Q  285 taccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||||||||| || || |||||||  ||||||||||||||||||||||| |||||||    
T  23201064 taccaaacaactttaactttaatttaaaagtttcaattttcaactttattctaaaagtaactttta 23200999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 13091885 - 13091924
Alignment:
Q  147 ttaatttatgataatgttttatataataatttataaattt 186  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13091885 ttaatttatgataatgttttatataataatttataaattt 13091924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 44743818 - 44743857
Alignment:
Q  147 ttaatttatgataatgttttatataataatttataaattt 186  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44743818 ttaatttatgataatgttttatataataatttataaattt 44743857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 10154585 - 10154624
Alignment:
Q  147 ttaatttatgataatgttttatataataatttataaattt 186  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  10154585 ttaatttatgataatgttttacataataatttataaattt 10154624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 22591906 - 22591945
Alignment:
Q  147 ttaatttatgataatgttttatataataatttataaattt 186  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  22591906 ttaatttatgataaagttttatataataatttataaattt 22591945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 41397410 - 41397481
Alignment:
Q  279 aacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||| ||||||||||||||||  ||||  ||||| | ||||| ||||||||||| ||||| |||||||    
T  41397410 aacaaataacaaacaactttaactttcacttttaagttctaatttttaactttattcttaaagtaactttta 41397481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 23628382 - 23628428
Alignment:
Q  55 aagagtacaagatgggagctacatggatagagttagaaataaaatag 101  Q
    |||||||||||||||  |||||||| |||||||||||||| ||||||    
T  23628382 aagagtacaagatggaggctacatgaatagagttagaaatcaaatag 23628428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 195 - 350
Target Start/End: Original strand, 3116 - 3271
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| || ||| |||||||||||       |||||||||||||||||    
T  3116 tttgtaataaaatttcaaagctcttttaaaaatattttgccaaacagattttaacttaaaagtactaattaagttgaaaaaaacaacaaataccaaacaa 3215  T
Q  295 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3216 ctttaacttcaacttcaaagttttaattttcaactttattctaaaagtgactttta 3271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 2887 - 2958
Alignment:
Q  78 tggatagagttagaaataaaatagccactaagttgttggaaaataaaaatcgttcaaatttatgatgtgtta 149  Q
    ||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  2887 tggatagagctagaaatcaaatagtcactaagttgttggaaaacaaaaatcgttcaagtttatgatgtgtta 2958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 2996 - 3035
Alignment:
Q  147 ttaatttatgataatgttttatataataatttataaattt 186  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  2996 ttaatttatgataatgtgttatataataatttataaattt 3035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 195 - 350
Target Start/End: Original strand, 38835684 - 38835839
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||| |||||||||||       |||||||||||||||||    
T  38835684 tttgtaataaaatctcaaagctcttttaaaaatattttgccaaacaaatttgaacttaaaagtactaattaagttgaaaaaaacaacaaataccaaacaa 38835783  T
Q  295 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  38835784 ctttaacttcaacttcaaagttttaattttcaactttattctaaaagtgaccttta 38835839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 196 - 350
Target Start/End: Original strand, 32605460 - 32605614
Alignment:
Q  196 ttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaac 295  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||| || ||| |||||||||||       ||||||||||||||||||    
T  32605460 ttgtaataaaatctcaaagctcttttaaaagtattttgccaaacaaattttaacttaaaagtactaattaagttgaaaaaaacaacaaataccaaacaac 32605559  T
Q  296 tttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32605560 tttaacttcaacttcaaagttttaattttcaactttattctaaaagtgactttta 32605614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 195 - 350
Target Start/End: Original strand, 16067771 - 16067925
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||||||||||||||||||||||||||||||||||  ||| ||||||| ||||| ||  || |||||||||||       |||||||||||||||||    
T  16067771 tttgtaataaaatctcaaagctcttttaaaaatattttaccaatcagatttaaacttaaaa-tactaattaagttgaaaaaaacaacaaataccaaacaa 16067869  T
Q  295 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16067870 ctttaacttcaacttcaaagttttaattttcaactttattctaaaagtgactttta 16067925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 278 - 351
Target Start/End: Complemental strand, 6577460 - 6577387
Alignment:
Q  278 caacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgacttttat 351  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  6577460 caacaaataccaaacaactttaacttcaacttcaaagttttaattttcaactttattctaaaagtaacttttat 6577387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 38835441 - 38835524
Alignment:
Q  66 atgggagctacatggatagagttagaaataaaatagccactaagttgttggaaaataaaaatcgttcaaatttatgatgtgtta 149  Q
    |||| ||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  38835441 atggaagctacatggacagagctagaaatcaaatagccactaagttgttggaaaacaaaaatcgttcaagtttatgatgtgtta 38835524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 32605340 - 32605379
Alignment:
Q  147 ttaatttatgataatgttttatataataatttataaattt 186  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  32605340 ttaatttatgataatgttttacataataatttataaattt 32605379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 38835559 - 38835598
Alignment:
Q  147 ttaatttatgataatgttttatataataatttataaattt 186  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  38835559 ttaatttatgataatgttttatataataatttatacattt 38835598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 196 - 350
Target Start/End: Complemental strand, 21022315 - 21022162
Alignment:
Q  196 ttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaac 295  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||| || ||| |||||||||||       |||||||||| |||||||    
T  21022315 ttgtaataaaatctcaaagctcttttaaaagtattttgccaaacaaattttaacttaaaagtactaattaagttgaaaaaa-caacaaatactaaacaac 21022217  T
Q  296 tttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||    
T  21022216 tttaactttaacttcaaagttttaattttcaactttattctaaaggtgactttta 21022162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 10257481 - 10257632
Alignment:
Q  199 taataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaacttt 298  Q
    |||||||||||||||| | | | |||| ||||||  |||||| |||| ||||| ||  || |||||||||||       ||| || ||||||||||||||    
T  10257481 taataaaatctcaaagatttataaaaagtattttaacaaacaaatttcaacttaaaaatactaattaagttgcaaaaaacaataattaccaaacaacttt 10257580  T
Q  299 aacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
     |||| ||||| |||||||| ||||||||||||||||||||||| |||||||    
T  10257581 gactttaacttaaaagttttaattttcaactttattctaaaagtaactttta 10257632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 17974811 - 17974739
Alignment:
Q  278 caacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||| | ||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |||||||    
T  17974811 caacaaatgctaaacaactttaactttatcttcaaagttttaattttcaactttattctaaaagtaactttta 17974739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 17982481 - 17982419
Alignment:
Q  288 caaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||||||||||| |  || |||||||| ||||||||||||||||||||||| |||||||    
T  17982481 caaacaactttaactttagatttaaagttttaattttcaactttattctaaaagtaactttta 17982419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 45297155 - 45297099
Alignment:
Q  278 caacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttatt 334  Q
    ||||| ||||||||| | |||||||| ||||| |||||||| |||||||||||||||    
T  45297155 caacatataccaaacgaatttaactttaactttaaagttttaattttcaactttatt 45297099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 21022438 - 21022399
Alignment:
Q  147 ttaatttatgataatgttttatataataatttataaattt 186  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  21022438 ttaatttataataatgttttacataataatttataaattt 21022399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 13560975 - 13561045
Alignment:
Q  278 caacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||  || ||||||||||||| |||||  ||||||| ||||| ||||||||||| ||||| |||||||    
T  13560975 caacaaatgtcacacaactttaactttaactt--aagttttaattttaaactttattcttaaagtaactttta 13561045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 195 - 350
Target Start/End: Original strand, 3598 - 3753
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||||||||||||||||| |||||||| |||||||  ||  ||||||| ||||| || ||| |||||||||||       |||||||||||||||||    
T  3598 tttgtaataaaatctcaaagcacttttaaacatattttaccacccagattttaacttaaaagtactaattaagttggaaaaaacaacaaataccaaacaa 3697  T
Q  295 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||    
T  3698 ctttaacttcaacttcaaagttttgattttcaacttcattctaaaattaactttta 3753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 195 - 350
Target Start/End: Complemental strand, 40659238 - 40659085
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||||||| ||||||||||||||||||||||||||  ||| || |||| ||||| ||  || |||||||||||       |||||||||||||||||    
T  40659238 tttgtaataaa-tctcaaagctcttttaaaaatattttaccaatcaaattttaacttaaaa-tactaattaagttgaaaaaaacaacaaataccaaacaa 40659141  T
Q  295 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  40659140 ctttaacttcaacttcaaagttttaattttcaacattattctaaaagtgactttta 40659085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 31955743 - 31955698
Alignment:
Q  305 aacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||| |||||||| ||||||||||||||||||||||| |||||||    
T  31955743 aacttaaaagttttaattttcaactttattctaaaagtaactttta 31955698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 350
Target Start/End: Original strand, 31956489 - 31956528
Alignment:
Q  311 aaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  31956489 aaagttttaattttcaactttattctaaaagtaactttta 31956528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 27132349 - 27132285
Alignment:
Q  278 caacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagt 342  Q
    ||||||||| ||||||||||||||||   |||  ||||||| ||||| ||||||||||| |||||    
T  27132349 caacaaatagcaaacaactttaactttcccttttaagttttaatttttaactttattcttaaagt 27132285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2117 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold2117
Description:

Target: scaffold2117; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 195 - 348
Target Start/End: Complemental strand, 1040 - 888
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnn-caacaaataccaaaca 293  Q
    ||||||||||| ||||||||||||||||||||||||||  ||| ||||||| ||||| ||  || |||||||||||        ||||||||||||||||    
T  1040 tttgtaataaa-tctcaaagctcttttaaaaatattttaccaatcagattttaacttaaaa-tactaattaagttgaaaaaaaacaacaaataccaaaca 943  T
Q  294 actttaacttcaacttcaaagttttgattttcaactttattctaaaagtgacttt 348  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  942 actttaacttcaacttcaaagttttaattttcaactttattctaaaagtgacttt 888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 195 - 350
Target Start/End: Complemental strand, 24642744 - 24642591
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaa 294  Q
    ||||||||||| |||||||||| |||||||||||||||  ||| ||||||| ||||| ||  || ||||||||||        |||||||||||||||||    
T  24642744 tttgtaataaa-tctcaaagcttttttaaaaatattttaccaatcagattttaacttaaaa-tactaattaagtttaaaaaaacaacaaataccaaacaa 24642647  T
Q  295 ctttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  24642646 ctttaacttcaacttcaaagtcttaattttaaactttattctaaaagtgactttta 24642591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 195 - 349
Target Start/End: Original strand, 52959084 - 52959238
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaacttgaaggtattaattaagttgnnnnnnn-caacaaataccaaaca 293  Q
    ||||||||||||||||||||||| |||||| |||||||   || || |||| ||||| ||  ||||||||||||||        ||||||||||||||||    
T  52959084 tttgtaataaaatctcaaagctcctttaaatatattttactaatcaaattttaacttaaaa-tattaattaagttgaaaaaaaacaacaaataccaaaca 52959182  T
Q  294 actttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttt 349  Q
      |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  52959183 gttttaacttcaactttaaagttttaattttcaactttattctaaaagtgactttt 52959238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 36332072 - 36332155
Alignment:
Q  66 atgggagctacatggatagagttagaaataaaatagccactaagttgttggaaaataaaaatcgttcaaatttatgatgtgtta 149  Q
    |||||||| |||||||||||| |||||||  |||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  36332072 atgggagcaacatggatagagctagaaatcgaatagccactaagttgttggaaaacaaaaatcgttcaagtttatgatgtgtta 36332155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 36332383 - 36332451
Alignment:
Q  282 aaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||    
T  36332383 aaataccaaacaactttaacttcaacttcaaagttttaattttcaactttatttcaaaagtgactttta 36332451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 25706068 - 25706179
Alignment:
Q  237 aacagatttgaacttgaaggtattaattaagttgnnnnnnncaacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattct 336  Q
    ||||||||| ||||| || ||| |||||||||||       || ||||||||||||||||||||||| ||||| |||||| | |||||||| ||||||||    
T  25706068 aacagatttcaacttaaaagtactaattaagttggaaaaaacaccaaataccaaacaactttaactttaactttaaagttgtaattttcaattttattct 25706167  T
Q  337 aaaagtgacttt 348  Q
    |||||| |||||    
T  25706168 aaaagtaacttt 25706179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 36332193 - 36332232
Alignment:
Q  147 ttaatttatgataatgttttatataataatttataaattt 186  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36332193 ttaatttatgataatgttttatataataatttataaattt 36332232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 25705999 - 25706051
Alignment:
Q  199 taataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaactt 251  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||| |||||    
T  25705999 taataaaatctcaaaactcttttaaaaatattttaccaaacagatttcaactt 25706051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 36332313 - 36332356
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaa 238  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  36332313 tttgtaataaaatttcaaagctcttttaaaaatattttgccaaa 36332356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 46105811 - 46105883
Alignment:
Q  278 caacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||| ||||||||||||||||  ||||  ||||| | ||||| ||||||||||| ||||| |||||||    
T  46105811 caacaaataacaaacaactttaactttcacttttaagttctaatttttaactttattcttaaagtaactttta 46105883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 25164718 - 25164788
Alignment:
Q  278 caacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgacttt 348  Q
    ||||||||| ||||||||||||||||  ||||  ||||| | ||||| ||||||||||| ||||| |||||    
T  25164718 caacaaatagcaaacaactttaactttcacttttaagttctaatttttaactttattcttaaagtaacttt 25164788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 2406128 - 2406200
Alignment:
Q  278 caacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2406128 caacaaatatcaaacaactttaacttcaacttcaaagttttaattttcaactttattctaaaagtgactttta 2406200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 9789485 - 9789417
Alignment:
Q  282 aaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  9789485 aaataccaaacaactttaacttcaacttcaaagttttaattttcaactttattctaaaagtgattttta 9789417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 9789555 - 9789499
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaactt 251  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  9789555 tttgtaataaaatctcaaagctcttttaaaaatattttgccaaacagattttaactt 9789499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 28107614 - 28107677
Alignment:
Q  285 taccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgacttt 348  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||    
T  28107614 taccaaacaactttaactttaacttaaaagttttaattttcaactttattctaaaagtaacttt 28107677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 38796051 - 38796113
Alignment:
Q  288 caaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||    
T  38796051 caaacaactttaactttaacttaaaagttttaattttcaactttattctaaaagtaactttta 38796113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 10094999 - 10094926
Alignment:
Q  72 gctacatggatagagttagaaataaaatagccactaagttgttggaaaataaaaatcgttcaaatttatgatgt 145  Q
    ||||||| ||||||| || |||  ||||||||| ||||||||||||||| ||||||||||||| ||| ||||||    
T  10094999 gctacattgatagaggtaaaaaccaaatagccattaagttgttggaaaacaaaaatcgttcaagtttgtgatgt 10094926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 9789675 - 9789636
Alignment:
Q  147 ttaatttatgataatgttttatataataatttataaattt 186  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  9789675 ttaatttatgataatgttttctataataatttataaattt 9789636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 10094308 - 10094269
Alignment:
Q  147 ttaatttatgataatgttttatataataatttataaattt 186  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  10094308 ttaatttatgataatgttttatataataatttatgaattt 10094269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 3301197 - 3301253
Alignment:
Q  278 caacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttatt 334  Q
    ||||||||||||||| |||||| ||| ||||| |||||||| |||| ||||||||||    
T  3301197 caacaaataccaaacgactttagctttaactttaaagttttaatttacaactttatt 3301253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 39511410 - 39511338
Alignment:
Q  278 caacaaataccaaacaactttaacttcaacttcaaagttttgattttcaactttattctaaaagtgactttta 350  Q
    ||||||| | ||||||||||||||||  ||||  ||||| | ||||| ||||||||||| ||||| |||||||    
T  39511410 caacaaaaagcaaacaactttaactttcacttttaagttctaatttttaactttattcttaaagtaactttta 39511338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 1342 - 1397
Alignment:
Q  195 tttgtaataaaatctcaaagctcttttaaaaatattttgtcaaacagatttgaactt 251  Q
    ||||||||||| ||||||||||||||||||||||||||  ||| ||||||| |||||    
T  1342 tttgtaataaa-tctcaaagctcttttaaaaatattttaccaatcagattttaactt 1397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 15772 - 15726
Alignment:
Q  55 aagagtacaagatgggagctacatggatagagttagaaataaaatag 101  Q
    |||||||||||||||  |||||||| |||||||||||||| ||||||    
T  15772 aagagtacaagatggaggctacatgaatagagttagaaatcaaatag 15726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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