View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_high_18 (Length: 354)
Name: NF20759_high_18
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 108 - 346
Target Start/End: Original strand, 1041458 - 1041696
Alignment:
| Q |
108 |
tagttttggtgcttacacgaacaagagcttggtcatggtaatcaagtttcaagagttgagaaacatcaaagtaagcataagaatctctagctttacgatg |
207 |
Q |
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| T |
1041458 |
tagttttggtgcttacacgaacaagagcttggtcatggtaatcaagtttcaagagttgagaaacatcaaaataagcataagaatctctagctttacgatg |
1041557 |
T |
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| Q |
208 |
attcttcaagatagcaatcctagaaattgcaagtgatgttaaatttttcaatttggaagtgaaactttttccaataagacccataattttctcacttcaa |
307 |
Q |
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| T |
1041558 |
attcttcaagatagcaatcctagaaattgcaagtgatgttaaatttttcaatttggaagtgaaactttttccaataagacccataattttctcacttcaa |
1041657 |
T |
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| Q |
308 |
gaatatttgtaatttgctagaaactttgatttgatgatg |
346 |
Q |
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| T |
1041658 |
aaatatttgaaatttgctagaaactttgatttgatgatg |
1041696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 1046015 - 1045916
Alignment:
| Q |
203 |
cgatgattcttcaagatagcaatcctagaaattgcaagtgatgttaaatttttcaatttggaagtgaaactttttccaataagacccataattttctcac |
302 |
Q |
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| T |
1046015 |
cgatggttcttcaagatagcaatgctagaaattgcaagtgatgttaagtttttcaatttggaagtgaagctttttccaataagacccat--ttttctcac |
1045918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 1041355 - 1041390
Alignment:
| Q |
17 |
caatccaatgttcaacctgttgataaataaacaata |
52 |
Q |
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| T |
1041355 |
caatccaatgttcaacctgttgataaataaacaata |
1041390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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