View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_high_20 (Length: 346)
Name: NF20759_high_20
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 335
Target Start/End: Complemental strand, 39878321 - 39877992
Alignment:
| Q |
6 |
agttttataatgcaataatattctttatttttataggctattgccacaggcaatctgtaccgctcaaaagttgcatcgatgctctggaggccacacggag |
105 |
Q |
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| T |
39878321 |
agttttataatgcaataatattctttatttttataggctattgccacaggcaatctgtaccgctcaaaagttgcatcgatgctccggaggccacacggag |
39878222 |
T |
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| Q |
106 |
gcttctagtaacgctaatccgttgaaaacttgcatagttggtaaattttctccaggatggtctgaagcacaacccttggtttccaagcaatcactcaaca |
205 |
Q |
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| T |
39878221 |
gcttctagtaacgttaatccgttgaaaacttgcatagttggcaaattttctccaggatggtctgaagcacaacccttggtttccaagcaatcactcaaca |
39878122 |
T |
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| Q |
206 |
ggcaccttttacctgtggaagctttagtaacttcaacaactcaagatgtttctgatacacctcttattggtgatgacaagatcggagtgttattgttaaa |
305 |
Q |
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| T |
39878121 |
ggcaccttttacctgtggaagctttagtaacttcaacaactcaagatgtttccgatacacctcttattggtgatgacaagatcggagtgttattgttaaa |
39878022 |
T |
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| Q |
306 |
ccttggaggtccagagactctagatgatgt |
335 |
Q |
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| T |
39878021 |
ccttggaggtccagagactctagatgatgt |
39877992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 335
Target Start/End: Complemental strand, 44622882 - 44622713
Alignment:
| Q |
166 |
tctgaagcacaacccttggtttccaagcaatcactcaacaggcaccttttacctgtggaagctttagtaacttcaacaactcaagatgtttctgatacac |
265 |
Q |
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| T |
44622882 |
tctgaagcaaaacccctggtttccaaacaatcactcaaaaagcgcatgttttcagtgggagctttagtagctcgaacagatcaggatgtttctgatgcaa |
44622783 |
T |
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| Q |
266 |
ctcttattggtgatgacaagatcggagtgttattgttaaaccttggaggtccagagactctagatgatgt |
335 |
Q |
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|||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
44622782 |
ctcttacatctgatgataagattggagtgttattgctaaaccttggaggtccagagactctagaagatgt |
44622713 |
T |
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