View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_high_21 (Length: 341)
Name: NF20759_high_21
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 780895 - 781122
Alignment:
| Q |
17 |
tcttctcactcagcaactgtttcggcagttttcttttcgttaaatgtacaacttaatgattcttctttaacattcttagaaaaattatataataaggtaa |
116 |
Q |
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| T |
780895 |
tcttctcactcagcaactgtttcggcagttttcttttcgttaaatgtacaacttaatgattcttctttaacattcttagaaaaattatataataaggtaa |
780994 |
T |
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| Q |
117 |
taatgtgcatatagaaattatatatgtccatactcaatatcaatgtgaataataaaaatgggatagtagtgatcatcttaaagtacataccaaagggaaa |
216 |
Q |
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| T |
780995 |
taatgtgcatatagaaattatatatgtccatactcaatatcaatgtgaataataaaaatgggatagtaatgatcatcttaaagtacataccaaagggaaa |
781094 |
T |
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| Q |
217 |
gtgtggatttgtgatcctttgaggacat |
244 |
Q |
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| T |
781095 |
gtgtggatttgtgatcctttgaggacat |
781122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 781120 - 781162
Alignment:
| Q |
277 |
cattcttgtatttcatatacttcaataattgccagttacaaaa |
319 |
Q |
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| T |
781120 |
cattcttgtatttcatatacttcaataattgtcagttacaaaa |
781162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 58 - 263
Target Start/End: Original strand, 26305064 - 26305274
Alignment:
| Q |
58 |
aaatgtacaacttaatgattcttctttaacattcttagaaaaa-ttatataataaggtaataatgtgcata--tagaaattatatatgtccatactcaat |
154 |
Q |
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| T |
26305064 |
aaatgtacaacttaattattcttgtttaacattcttagtaaaagttacataataaggtaatagtgtagatagatagcaattagtgataaccatactcaac |
26305163 |
T |
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| Q |
155 |
atcaatgtgaataa-taaaaatgggatagtagtgatcatcttaaagtacatacc-aaagggaaagtgtggatttgtgatcctttgaggacataatgagta |
252 |
Q |
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| T |
26305164 |
attaatatgaataaataaaaatgggatagtagtgattatgataaagtacataccaaaaggggtagtgtggatttgtgatcctttgaggacgtattcatta |
26305263 |
T |
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| Q |
253 |
tcagatatggg |
263 |
Q |
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| T |
26305264 |
tcagaaatggg |
26305274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 46208758 - 46208818
Alignment:
| Q |
63 |
tacaacttaatgattcttctttaacattcttagaaaaattatataataaggtaataatgtg |
123 |
Q |
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| T |
46208758 |
tacaacttaatgatttttcttgaagattcttagaaaagttatacaataaggttatagtgtg |
46208818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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