View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_high_24 (Length: 316)
Name: NF20759_high_24
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 28 - 305
Target Start/End: Original strand, 10216690 - 10216967
Alignment:
| Q |
28 |
tctgacatttctaattttatcaggaatctctacctcaagattatcccaaaaattataattatcatagtttcaaaagaacacaaaagcaggttcttgctaa |
127 |
Q |
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| T |
10216690 |
tctgacatttctaattttatcaggaatctctacctcaagattatcccaaaaattataattatcatagtttcaaaagaacacaaaagcaggttcttgctaa |
10216789 |
T |
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| Q |
128 |
agccttagaaatggaacgagaaaacagccaagactgtaatccagttggctcatacattaggctgcatatcatggaagtacccactggtgttgcttcaaag |
227 |
Q |
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| T |
10216790 |
agccttagaaatggaacgagaaaacagccaagactgtattccagttggctcatacattaggctgcatatcatggaagtacccactggtgttgcttcaaag |
10216889 |
T |
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| Q |
228 |
ttatgtatactttcaaagacaacaccggttacagcatgtggtctgctcgaacacgaaaacgaagtttctgtccttcat |
305 |
Q |
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| T |
10216890 |
ttatgtatactttcaaagacaacaccggttacagcatgtggtctgctggaacacgaaaacgaagtttctgtccttcat |
10216967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 5587643 - 5587749
Alignment:
| Q |
45 |
tatcaggaatctctacctcaagattatcccaaaaattataattatcatagtttcaaaagaacacaaaagcaggttcttgctaaagccttagaaatggaac |
144 |
Q |
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|||| ||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||| |||| || |||||||||||||| |||||| |||||| |
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| T |
5587643 |
tatctggaatctctacctcaagattatcacagaaattttaattatcatagtttctaaagaac-gaaaaacaagttcttgctaaagctttagaattggaac |
5587741 |
T |
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| Q |
145 |
gagaaaac |
152 |
Q |
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| T |
5587742 |
aagaaaac |
5587749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 5592604 - 5592710
Alignment:
| Q |
45 |
tatcaggaatctctacctcaagattatcccaaaaattataattatcatagtttcaaaagaacacaaaagcaggttcttgctaaagccttagaaatggaac |
144 |
Q |
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|||| ||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||| |||| || |||||||||||||| |||||| |||||| |
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| T |
5592604 |
tatctggaatctctacctcaagattatcacagaaattttaattatcatagtttctaaagaac-gaaaaacaagttcttgctaaagctttagaattggaac |
5592702 |
T |
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| Q |
145 |
gagaaaac |
152 |
Q |
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||||||| |
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| T |
5592703 |
aagaaaac |
5592710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 28 - 268
Target Start/End: Complemental strand, 53887215 - 53886975
Alignment:
| Q |
28 |
tctgacatttctaattttatcaggaatctctacctcaagattatcccaaaaattataattatcatagtttcaaaagaacacaaaagcaggttcttgctaa |
127 |
Q |
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|
|||||||||| |||| ||||||||||||||||||||||||||| |||||| |||| | | | ||| ||| |||||| ||||||||| ||||||||||| |
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| T |
53887215 |
tctgacatttgtaataatatcaggaatctctacctcaagattatgccaaaatttatgagtttgataattttaaaagactacaaaagcatgttcttgctaa |
53887116 |
T |
|
| Q |
128 |
agccttagaaatggaacgagaaaacagccaagactgtaatccagttggctcatacattaggctgcatatcatggaagtacccactggtgttgcttcaaag |
227 |
Q |
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||| |||||| ||||| ||||||||| | |||||| | ||||||||||||| |||||||||||||| |||||| |||| || |||||| ||||| |
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| T |
53887115 |
agctttagaattggaaaaagaaaacagagaggactgtgtttcagttggctcatatgctaggctgcatatcaaggaagtgcccagtgctgttgcatcaaaa |
53887016 |
T |
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| Q |
228 |
ttatgtatactttcaaagacaacaccggttacagcatgtgg |
268 |
Q |
| |
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||||||||| || |||||||||| ||| ||||| ||||||| |
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| T |
53887015 |
ttatgtataattgcaaagacaaccccgattacaacatgtgg |
53886975 |
T |
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