View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_high_3 (Length: 618)
Name: NF20759_high_3
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 3e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 386 - 562
Target Start/End: Original strand, 16566621 - 16566797
Alignment:
| Q |
386 |
ctgccatttaagaacactgcacacagatgtttgcattacactgtacgttatacaaatatataacaccgtctaattagtagatgcacatttgtcagttgac |
485 |
Q |
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| T |
16566621 |
ctgccatttaagaacactgcacacaatcgtttgcattgcattgtacgttatacaaatatataacaccgtctaattagtagatgcacatttgtcagttgac |
16566720 |
T |
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| Q |
486 |
atttnnnnnnncaacttacagagttcaaactttcatcacaacattttcagaatactagtaaagaagatatccatgct |
562 |
Q |
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| T |
16566721 |
atttaaaaaaacaacttatagagttcaaactttcatcacaacattttcagaatactagtaaagaagatatccatgct |
16566797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 498 - 601
Target Start/End: Original strand, 6415817 - 6415922
Alignment:
| Q |
498 |
aacttacagagttcaaactttcatcacaacattttcagaatactagtaaagaagatatccatg--ctctgagttttgtgacgttttttaccacatgtttc |
595 |
Q |
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||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||| |||| |||| |||| ||| | ||||||||||||| |
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| T |
6415817 |
aacttacagagttcaaaatttcagcacaaccctttaagaatactagtaaagaagatatccatgctctcttagttgtgtgcagttctctaccacatgtttc |
6415916 |
T |
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| Q |
596 |
actccc |
601 |
Q |
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|||||| |
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| T |
6415917 |
actccc |
6415922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 564 - 608
Target Start/End: Original strand, 16569399 - 16569443
Alignment:
| Q |
564 |
tgagttttgtgacgttttttaccacatgtttcactccctcctttg |
608 |
Q |
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| T |
16569399 |
tgagttttgtgaggttttttaccacatgtttcactccctcctttg |
16569443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 498 - 603
Target Start/End: Complemental strand, 13470982 - 13470873
Alignment:
| Q |
498 |
aacttacagagttcaaac--tttcatcacaacattttcagaatactagtaaagaagatatccatgctctg--agttttgtgacgttttttaccacatgtt |
593 |
Q |
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|||||||||||||||||| ||||| ||||||| || | ||||||||||||||||||||||||||||| || | |||| ||| | ||||||||||| |
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| T |
13470982 |
aacttacagagttcaaacactttcagcacaacacttccgaaatactagtaaagaagatatccatgctctcttagctgtgtgcagttctctaccacatgtt |
13470883 |
T |
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| Q |
594 |
tcactccctc |
603 |
Q |
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|||||||||| |
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| T |
13470882 |
tcactccctc |
13470873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 551
Target Start/End: Complemental strand, 51764688 - 51764635
Alignment:
| Q |
498 |
aacttacagagttcaaactttcatcacaacattttcagaatactagtaaagaag |
551 |
Q |
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|||| |||||||||||||||||| |||| || ||||| |||||||||||||||| |
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| T |
51764688 |
aactaacagagttcaaactttcagcacagcactttcaaaatactagtaaagaag |
51764635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 19469074 - 19469001
Alignment:
| Q |
191 |
aattcaaggcaaagcaaagaaaaagaaaacaatttaaaacggcatataacaccccaggtgttaatgatggcagaa |
265 |
Q |
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| T |
19469074 |
aattcaaggcaaagagaagaaaaacaaaacaatttaaaactgcatataaca-cccaagtgttgttgatggcagaa |
19469001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 535
Target Start/End: Complemental strand, 19468746 - 19468708
Alignment:
| Q |
497 |
caacttacagagttcaaactttcatcacaacattttcag |
535 |
Q |
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| T |
19468746 |
caacttacagagttcaaactttcagcacaacactttcag |
19468708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 10170325 - 10170285
Alignment:
| Q |
499 |
acttacagagttcaaactttcatcacaacattttcagaata |
539 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||| |
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| T |
10170325 |
acttacagagttcaaactttcagcacaacactttcagaata |
10170285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 10177850 - 10177810
Alignment:
| Q |
499 |
acttacagagttcaaactttcatcacaacattttcagaata |
539 |
Q |
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| T |
10177850 |
acttacagagttcaaactttcagcacaacactttcagaata |
10177810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 564
Target Start/End: Original strand, 10614476 - 10614510
Alignment:
| Q |
530 |
tttcagaatactagtaaagaagatatccatgctct |
564 |
Q |
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| T |
10614476 |
tttcagaatactagtaaagaagatacccatgctct |
10614510 |
T |
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