View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_high_34 (Length: 203)
Name: NF20759_high_34
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 46267123 - 46267267
Alignment:
| Q |
10 |
gtgagatgaagatagaatagatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggaatctcaagagaatcacaatcatac |
109 |
Q |
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| T |
46267123 |
gtgacatgaagatagaatagatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgtgaatcccaagagaatcacaatcatac |
46267222 |
T |
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| Q |
110 |
atataactcctttacctttgtctaatgatgcattgaataattgtt |
154 |
Q |
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| T |
46267223 |
atataactcctttacctttgtctaatgatgcattgaataattgtt |
46267267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 55859138 - 55859282
Alignment:
| Q |
10 |
gtgagatgaagatagaatagatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggaatctcaagagaatcacaatcatac |
109 |
Q |
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| T |
55859138 |
gtgacatgaagatagaatatatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggtatctcaagagaatcacaatcatac |
55859237 |
T |
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| Q |
110 |
atataactcctttacctttgtctaatgatgcattgaataattgtt |
154 |
Q |
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| T |
55859238 |
atataactcctttacctttgtctaatgatgcattgagtaattgtt |
55859282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 3822895 - 3822751
Alignment:
| Q |
10 |
gtgagatgaagatagaatagatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggaatctcaagagaatcacaatcatac |
109 |
Q |
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| T |
3822895 |
gtgacatgaagatagaagagatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggaatctcaagagaatcacaatcatac |
3822796 |
T |
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| Q |
110 |
atataactcctttacctttgtctaatgatgcattgaataattgtt |
154 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
3822795 |
atataactcctttacccctgtctaatgatgcattgaatatttgtt |
3822751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 29275460 - 29275316
Alignment:
| Q |
10 |
gtgagatgaagatagaatagatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggaatctcaagagaatcacaatcatac |
109 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29275460 |
gtgacatgaagatagaatatatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggtatctcaagagaatcacaatcatac |
29275361 |
T |
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| Q |
110 |
atataactcctttacctttgtctaatgatgcattgaataattgtt |
154 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
29275360 |
atataactcctttacctttgtctaatgatacattgagtaattgtt |
29275316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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