View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_high_5 (Length: 561)
Name: NF20759_high_5
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 11 - 545
Target Start/End: Complemental strand, 37835283 - 37834748
Alignment:
| Q |
11 |
cacagaaatggaaacttcccaatcgtctaatcttcatccacatagttaccatattcatttgcaaactaacggtgctcaagcatcagaatgtgaagaagct |
110 |
Q |
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| T |
37835283 |
cacagaaatggaaacttctcgatcgtctaatcttcatccacatagttaccatattcatttgcaaactaacggtgctcaagcatcagaatgtgaagaagct |
37835184 |
T |
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| Q |
111 |
gaattaggtatatttttcttgggcttccctcattctatttaaagatttgaaatgttttacttttgcgctaagagaacattttgaataacctttttatgct |
210 |
Q |
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| T |
37835183 |
gaattaggtatatttttcttgggcttccctcattctatttaaagatttgaaatgttttacttttgcgctaagagaacattttgaataacctttttatgct |
37835084 |
T |
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| Q |
211 |
tttattcttcgttcactttttctgtgtatctattttaacat-gtgactcattgtaatgcttatagcattcaatagcgaagcaaattctgatccctactct |
309 |
Q |
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| T |
37835083 |
tttattcttcgttcactttttctgtgtatctattttaacattgtcactcattgtaatgtttatagcattcaatagcgaagcaaattctgatctccactct |
37834984 |
T |
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| Q |
310 |
tttcttgagctgcaatgccctgtttctcagaagattaaaactcaactcgtaggttctaactgttctctaccactcaaaggtaaatttcttctattttatt |
409 |
Q |
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| T |
37834983 |
tttcttgagctgcaatgccctgtttctcagaagattaaaactcaactcgtaggttctaactgttctctaccactcaaaggtaaatttcttctattttatt |
37834884 |
T |
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| Q |
410 |
ttgatgtactgtcgatgtaaaataaattggttacaggtttcccttctatcactcaatcatgcatttccatgtcactaaaagaggatgacttttttagatg |
509 |
Q |
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| T |
37834883 |
ttaatgtactgtcgatgtaaaataaattggttacaggtttcccttctatcactcaatcatgcatttccatgtcactaaaagaggatgacttttttagatg |
37834784 |
T |
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| Q |
510 |
attgttgtaagaatcaaactttgtgacatagcaatg |
545 |
Q |
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| T |
37834783 |
attgttgtaagaatcaaacttagtgacatagcaatg |
37834748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 154 - 405
Target Start/End: Complemental strand, 37844044 - 37843793
Alignment:
| Q |
154 |
gatttgaaatgttttacttttgcgctaagagaacattttgaataaccttttt-atgcttttattcttcg-ttcactttttctgtgtatctattttaacat |
251 |
Q |
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| T |
37844044 |
gatttgaaatgttttactatcgcacatagaaaactttttgaataaccttttttatttttttattcttcaattcaccttctc---gtgtctattttaatat |
37843948 |
T |
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| Q |
252 |
-gtgactcattgtaatgcttatagcattcaatagcgaagcaaattctgatccctactcttttcttgagctgcaatgccctgtttctcagaagattaaaac |
350 |
Q |
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| T |
37843947 |
tgtaactcgatgtaatgtttgtagcattcaatagccatgcaaattcggatttctactcttttcttgagctgcaacagcctgctgttcaaaagattaaagc |
37843848 |
T |
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| Q |
351 |
tcaactcgtaggttctaactgttctctaccactcaaaggtaaatttcttctattt |
405 |
Q |
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| T |
37843847 |
tcaactcccttattctaactgtcctctacctctcaaaggtaaatttcttcaattt |
37843793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 502
Target Start/End: Complemental strand, 37843754 - 37843678
Alignment:
| Q |
426 |
gtaaaataaattggttacaggtttcccttctatcactcaatcatgcatttccatgtcactaaaagaggatgactttt |
502 |
Q |
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|||||||||||| | |||| |||||||||||| || ||||||||| |||||| | ||| |||||| || |||||||| |
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| T |
37843754 |
gtaaaataaattcgatacatgtttcccttctaccaatcaatcatgtatttccgtctcattaaaagcgggtgactttt |
37843678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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