View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_high_7 (Length: 543)
Name: NF20759_high_7
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Original strand, 10050883 - 10051401
Alignment:
| Q |
8 |
tgagatgaaggagttctagttcaagtcagtcaaccccatcacatcactacttactctcaaacaaaacaaaaaagatttttgaaatttatgtggtattatt |
107 |
Q |
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| T |
10050883 |
tgagatgaaggagttctagttgaagtccgtcaacctcatcacatcacaacttactctcaaacaaaacaaaa-agatttttgaaatttatgtggtattatt |
10050981 |
T |
|
| Q |
108 |
atctgcgactagctatatacatgatcaccaacgtaagagcatttatattcatggtatcatattactgaatcatagatgcaatatgagatgggcaatgtta |
207 |
Q |
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| T |
10050982 |
atctgcgactagctatatacatgatcaccaacgtaagagcatttatattcatggtatcatatcactgaatcatagatgcaatatgagatgggcaatgtta |
10051081 |
T |
|
| Q |
208 |
tagtatatgccttggacattgagaagggtgcctttccctgaacacatgttggaagtgaaccgctagtatcaaggaatgaggatgcattctatcgactcca |
307 |
Q |
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| T |
10051082 |
tagtatatgccttggacattgagaagggtgcctttccctgaacacatgttggaagtgcaccgctagtatcaaggaatgaggatgcattctatcgactcca |
10051181 |
T |
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| Q |
308 |
tatatatagatatatgtgccaatatttataatgtaatacaaatacatgtgttatacaacttgttccgtcacacatatatatgtatagcggtcagtggatg |
407 |
Q |
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| T |
10051182 |
tatatataggtatatgtgccaatatttataatgtaatacaaatacatgtgttatacaacttgttccgtcacacatatatatgtatagcggtcagtggatg |
10051281 |
T |
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| Q |
408 |
ttagtagaaaattttagatatgatcgtgattcatgcagaagatatnnnnnnntatatgtgcttccacatcacacgtatatgttatagataattttggtat |
507 |
Q |
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| T |
10051282 |
ttagtagaaaattttagatatgatcatgattcatgcagaagatataaaaaaatatatgtgcttccacatcacacgtatatgttatagataattttgatat |
10051381 |
T |
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| Q |
508 |
catgttcggtttatgagaac |
527 |
Q |
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| T |
10051382 |
catgttcggtttatgagaac |
10051401 |
T |
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