View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_high_9 (Length: 521)
Name: NF20759_high_9
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 499
Target Start/End: Complemental strand, 3084615 - 3084129
Alignment:
| Q |
11 |
atgaaggaaataacagagtttgtgtactcttttttgacctgcaagaaatcaaatatcgagcattagaaaacaccgagaatgtcacaacagttaaatatac |
110 |
Q |
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| T |
3084615 |
atgaaggaaataacagagtttgtgtactcttttttgacctgcaagaaatcaaatatcgagcgtcagaaaacaccgagaatgtcacaacagttaaatatac |
3084516 |
T |
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| Q |
111 |
cttttagatctggttcaatacttctacgaatttcatgtcaggttcaccatgaagtccttcatgcgtgttacgatataatgtgattctctcattattgtat |
210 |
Q |
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| T |
3084515 |
cttttagatctggttcaatacttctacgaatttcatgtcaggttcaccatgaagtccttcatacgtgttacgatataatgtgattctctcattattgtat |
3084416 |
T |
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| Q |
211 |
tttatattgtaattatgttaggattaagttgtccatatgtgtagttaatttctttatttctttgtcttaagaaactaggttaggacttcttcgtccacaa |
310 |
Q |
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| T |
3084415 |
tttatattgtaattatgttaggattaagtggtccatatgtgtagttaatttctttatttctttgtcttaagaaactaggttaggacttcttcgtccccaa |
3084316 |
T |
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| Q |
311 |
gataattatgcctttgcagttacatataaaaccctcaagttcagcagtctttaccgtaagcctgaacattctttctctgattgtcccactataaattgtc |
410 |
Q |
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| T |
3084315 |
gataattatgcctttgcagttacatataaaacc--caagttcagcagtctttaccttaagcctgaacattctttctctgattgtcccactataaattgtc |
3084218 |
T |
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| Q |
411 |
ataactgcatgagaaagggtcacattgcttcaaactgttgttgatgctgcaagtcacccgaacacttaattcagaattgtcctactcgt |
499 |
Q |
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| T |
3084217 |
ataactgcatgagaaagggtcatattgcttcaaactgttgttgatgctgcaagtcacccaaacacttaattcagaattgtcctactcgt |
3084129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 274 - 499
Target Start/End: Original strand, 14824530 - 14824755
Alignment:
| Q |
274 |
gtcttaagaaactaggttaggacttcttcgtccacaagataattatgcctttgcagttacatataaaaccctcaagttcagcagtctttaccgtaagcct |
373 |
Q |
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| T |
14824530 |
gtctgaagaaactagattgggacttcttcgccaacaagataatcttgcctttgcagttacaaaaaaaattcccaaattttgtcgagtttgccaaatgact |
14824629 |
T |
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| Q |
374 |
gaacattctttctctgattgtcccactataaattgtcataactgcatgagaaagggtcacattgcttcaaactgttgttgatgctgcaagtcacccgaac |
473 |
Q |
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| T |
14824630 |
ggacattcttttcctgattgtcccaatgtagaatgtcataactgcaagaaaaaaggtcatattgcatcaaactgttgtcgatattgcaagacacctggac |
14824729 |
T |
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| Q |
474 |
acttaattcagaattgtcctactcgt |
499 |
Q |
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| T |
14824730 |
acttaattcagaattgtcctactcgt |
14824755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 2511435 - 2511496
Alignment:
| Q |
176 |
tgttacgatataatgtgattctctcattattgtattttatattgtaattatgttaggattaa |
237 |
Q |
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| T |
2511435 |
tgttatgatatgttgtgattctctcattattgtattttatattgtaattatgttaggattaa |
2511496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 2510292 - 2510341
Alignment:
| Q |
176 |
tgttacgatataatgtgattctctcattattgtattttatattgtaatta |
225 |
Q |
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| T |
2510292 |
tgttacgatatgttgtgattctctcattattgtattttatattgtaatta |
2510341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 491
Target Start/End: Complemental strand, 53018395 - 53018315
Alignment:
| Q |
411 |
ataactgcatgagaaagggtcacattgcttcaaactgttgttgatgctgcaagtcacccgaacacttaattcagaattgtc |
491 |
Q |
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| T |
53018395 |
ataactgcatgaaaaagggtcatattacttcaaattgttgtcgatactgcaagacagccggtcacttgattcaaaattgtc |
53018315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 27684379 - 27684464
Alignment:
| Q |
189 |
tgtgattctctcattattgtattttatattgtaattatgttaggattaagttgtccatatgtgtagttaatttctttatttctttgt |
275 |
Q |
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| T |
27684379 |
tgtgattctctcatg-ttgtattttatattataatcatgttaggattaactatcctttatgtgtaattattttatttatttctttgt |
27684464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 497
Target Start/End: Original strand, 16501813 - 16501899
Alignment:
| Q |
411 |
ataactgcatgagaaagggtcacattgcttcaaactgttgttgatgctgcaagtcacccgaacacttaattcagaattgtcctactc |
497 |
Q |
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|||| ||| ||| ||||||||| ||||||||||| |||||| ||| ||||||| || || |||| || ||||| |||||||| |||| |
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| T |
16501813 |
ataattgcttgaaaaagggtcatattgcttcaaattgttgtcgatactgcaagacagccaaacatttgattcaaaattgtcccactc |
16501899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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