View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20759_low_1 (Length: 914)
Name: NF20759_low_1
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 816; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 816; E-Value: 0
Query Start/End: Original strand, 1 - 910
Target Start/End: Original strand, 3744207 - 3745109
Alignment:
| Q |
1 |
atcccgtagcatcccaaatgatgtatcactgtccctatatctatgtcatgtgctttctcttgtgcaaagcttagtcttcaaactcagtaaaattttgaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3744207 |
atcccgtagcatcccaaatgatgtatcactgttcctatatctatgccatgtgctttctcttgtgtaaagcttagtcttcaaactcagtaaaattttgaaa |
3744306 |
T |
|
| Q |
101 |
tatatataattttataaatttatttgatagtcctgagatggttgaacaatgaattatcaatcatcaattatgctagcccaaagctcgttccgtagaagga |
200 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3744307 |
tatctataatttcataaatttatttgatagtcctgagatggttgaacaatgaattatcaatcatcaattatgctagctcaaagctcgttccgtagaagga |
3744406 |
T |
|
| Q |
201 |
tttatcgcgtcaaaagtagcaagacatagtgaacaaaatatccaacttaaaacaagaaaacatatgctaaatttaatcaaatacatcatatttccctctc |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3744407 |
tttatcgcgtcataagtagcaagacatagcgaataaaatatccaacttaaaacaagaaaacatatgctaaatttaatcaaatacatcatatttctctctc |
3744506 |
T |
|
| Q |
301 |
ttaatccacaattactaattcaaaatcaagaacaaagaacaagaacaatcacaatcacagaaacagaataactgcattgcaaatcaaaattactaatttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744507 |
ttaatccacaattactaattcaaaatcaaga-------acaagaacaatcaaaatcacagaaacagaataactgcattgcaaatcaaaattactaatttt |
3744599 |
T |
|
| Q |
401 |
tattacatcaaaccaaataccatcacacaagcacgaccttaaaaaacaacctggtactcttctgcccccaaagaccatcacacatacactacatcattat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3744600 |
tattacatcaaaccaaataccatcacacaagcacgaccttaaaaaacaacctagtactcttctgcccccaaagaccatcacacatacactacatcattat |
3744699 |
T |
|
| Q |
501 |
tcaaaacaaaaattcaagcaatctgaacttgaatggttctgggcttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttg |
600 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3744700 |
tcaaaacaaaaattcaagcaacctgaacctgaatggttctaggtttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttg |
3744799 |
T |
|
| Q |
601 |
agaaacagcagaaacagcatcagtattagcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcacca |
700 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3744800 |
acaaacagcagaaacagcatcagtattagcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcacca |
3744899 |
T |
|
| Q |
701 |
ccttctttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgt |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3744900 |
ccttctttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgt |
3744999 |
T |
|
| Q |
801 |
caatcacgaacacgtatgaattctgatcttccttaatatctgcaggagtagcagccattgccttggcatctctaacataggatctagttggagcattgtg |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3745000 |
caatcacgaacacgtatgaattctgatcttccttaatatctgcaggagtagcagccattgccttggcatctctaacataggatctagttggagcattgtg |
3745099 |
T |
|
| Q |
901 |
tgatgatgtc |
910 |
Q |
| |
|
|||||||||| |
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|
| T |
3745100 |
tgatgatgtc |
3745109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 513 - 557
Target Start/End: Complemental strand, 4084497 - 4084453
Alignment:
| Q |
513 |
ttcaagcaatctgaacttgaatggttctgggcttcttaggctgag |
557 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||||||| |
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|
| T |
4084497 |
ttcaagcaatctgaacctgaatagttctgggtttcttaggctgag |
4084453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 7e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 514 - 819
Target Start/End: Original strand, 48302914 - 48303219
Alignment:
| Q |
514 |
tcaagcaatctgaacttgaatggttctgggcttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgagaaacagcagaa |
613 |
Q |
| |
|
|||||||| || ||| ||||| ||| | ||||||||||| | |||||||||||| || | |||||||||| | ||||| ||||||||| ||||||||||| |
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|
| T |
48302914 |
tcaagcaaccttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaagaacaccatcttgacaaacagcagaa |
48303013 |
T |
|
| Q |
614 |
acagca---tcagtattagcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttct |
710 |
Q |
| |
|
||| || ||| || ||||||||| || | |||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||||| |
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|
| T |
48303014 |
acaccaccttcaacatcagcattctctggtaacacaaatttcctcataaacttaccaacccttctttccatcttcaaatattt---accaccttctttct |
48303110 |
T |
|
| Q |
711 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
810 |
Q |
| |
|
||||||| |||||||| || |||||||||| |||||| || |||||||| ||||||||||| || || ||||||||||| ||||||||||| | |||||| |
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|
| T |
48303111 |
cttcttctctcttcctttcaccgcttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaa |
48303210 |
T |
|
| Q |
811 |
cacgtatga |
819 |
Q |
| |
|
||||||||| |
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|
| T |
48303211 |
cacgtatga |
48303219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 711 - 819
Target Start/End: Complemental strand, 10462270 - 10462162
Alignment:
| Q |
711 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
810 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| |||||||||||||| |||| ||| ||| |||| |
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|
| T |
10462270 |
cttcttccctcttcctctcgccggttatcacaaccactttatcatcttcaacctcaaccttgatatcaccagatttcaatcccggcaagtccatctcgaa |
10462171 |
T |
|
| Q |
811 |
cacgtatga |
819 |
Q |
| |
|
||| |||| |
|
|
| T |
10462170 |
tacgaatga |
10462162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 711 - 834
Target Start/End: Original strand, 10539854 - 10539977
Alignment:
| Q |
711 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
810 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| ||||||||| ||| |||| || || |||| |
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|
| T |
10539854 |
cttcttccctcttcctctcgccggttatcacaaccacattatcatcttcaacctcaaccttgatatcatcagatttcattcccagcatatctgtctcgaa |
10539953 |
T |
|
| Q |
811 |
cacgtatgaattctgatcttcctt |
834 |
Q |
| |
|
|||||| || || |||| |||||| |
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|
| T |
10539954 |
cacgtacgagttttgatattcctt |
10539977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 553 - 642
Target Start/End: Complemental strand, 10462434 - 10462342
Alignment:
| Q |
553 |
ctgaggaggaggcaatttct---gaacagtaacactcagaaccccatcttgagaaacagcagaaacagcatcagtattagcattctcaggaag |
642 |
Q |
| |
|
|||||||||||||||||||| || |||||||| | || ||||||||| || | ||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
10462434 |
ctgaggaggaggcaatttcttgagagcagtaacagtaagcaccccatctcgacacacagccgaaacagcatcagcattagcattctcaggaag |
10462342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 677 - 756
Target Start/End: Original strand, 10543464 - 10543543
Alignment:
| Q |
677 |
tccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatc |
756 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || ||||| |
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|
| T |
10543464 |
tccattctcaaatacttaacaccttcttctacttcttcttccctcttcctttctccacttatcacaaccacattttcatc |
10543543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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