View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20759_low_10 (Length: 429)

Name: NF20759_low_10
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20759_low_10
NF20759_low_10
[»] chr3 (11 HSPs)
chr3 (26-115)||(28476819-28476908)
chr3 (52-126)||(28173279-28173353)
chr3 (45-115)||(28476143-28476213)
chr3 (55-115)||(27905380-27905440)
chr3 (55-112)||(28516483-28516540)
chr3 (211-299)||(28173368-28173454)
chr3 (304-351)||(33444063-33444110)
chr3 (176-240)||(27956907-27956971)
chr3 (304-346)||(9467006-9467048)
chr3 (55-115)||(28475398-28475458)
chr3 (80-115)||(27995291-27995326)
[»] chr4 (1 HSPs)
chr4 (304-351)||(56366423-56366470)
[»] chr7 (2 HSPs)
chr7 (304-346)||(37548319-37548361)
chr7 (304-351)||(10015281-10015328)
[»] scaffold0065 (1 HSPs)
scaffold0065 (304-346)||(66833-66875)
[»] chr6 (1 HSPs)
chr6 (304-346)||(4090320-4090362)
[»] chr5 (1 HSPs)
chr5 (305-346)||(32699273-32699314)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 28476908 - 28476819
Alignment:
Q  26 acactaccttagacaatgagatgctgctagctactgcatattggagaaagatcaggagaattgttcatacggcttgaacatttgctgaaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||||||||    
T  28476908 acactaccttagacaatgagatgctgctagctactgcatattggagactgatcaggagaattgttcgtacagcttgaacatttgctgaaa 28476819  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 28173279 - 28173353
Alignment:
Q  52 ctagctactgcatattggagaaagatcaggagaattgttcatacggcttgaacatttgctgaaataaggtaacaa 126  Q
    |||||||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||    
T  28173279 ctagctactgaatattagagaaagatcaagagaatagttcatacggcttgaacatttgctgaaacaaggtaacaa 28173353  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 28476213 - 28476143
Alignment:
Q  45 gatgctgctagctactgcatattggagaaagatcaggagaattgttcatacggcttgaacatttgctgaaa 115  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  28476213 gatgatgctagctactgcatattggagaaatatcaggagaattgttcatatggcttgaccatttgctgaaa 28476143  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 27905380 - 27905440
Alignment:
Q  55 gctactgcatattggagaaagatcaggagaattgttcatacggcttgaacatttgctgaaa 115  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  27905380 gctactgcatattggagaaagatcaggagaatggttcatatggcttgaacatttgctgaaa 27905440  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 28516540 - 28516483
Alignment:
Q  55 gctactgcatattggagaaagatcaggagaattgttcatacggcttgaacatttgctg 112  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  28516540 gctactgcatattggagaaagattagtagaattgttcatacggcttgaacatttgctg 28516483  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 28173368 - 28173454
Alignment:
Q  211 atacaaattatgtttagtccttgccttattttataatccatgtaatcacaacactgtgtagcttttacttattctcttaaatgttttaa 299  Q
    ||||||||||| |||||| | ||| ||||||||| |||||||||||||||||||  |||||||||| |||||||| || ||||||||||    
T  28173368 atacaaattatatttagtacatgctttattttatgatccatgtaatcacaacac--tgtagctttttcttattctatttaatgttttaa 28173454  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 33444110 - 33444063
Alignment:
Q  304 gccgttcatagcattttaggggccttagacatagaatgaaaaatgacc 351  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  33444110 gccgttcctagcattttaggggccttagacatagaatgaaaaaggacc 33444063  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 27956907 - 27956971
Alignment:
Q  176 tgatttctcattcaatccgaaatcaatatcaccttatacaaattatgtttagtccttgccttatt 240  Q
    ||||| ||||| ||| |||||||||||||||||||| | ||||||| |||||| |||||||||||    
T  27956907 tgattgctcatacaaaccgaaatcaatatcaccttagataaattatatttagtacttgccttatt 27956971  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 9467006 - 9467048
Alignment:
Q  304 gccgttcatagcattttaggggccttagacatagaatgaaaaa 346  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  9467006 gccgttcctagcattttaggggccttagatatagaatgaaaaa 9467048  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 28475458 - 28475398
Alignment:
Q  55 gctactgcatattggagaaagatcaggagaattgttcatacggcttgaacatttgctgaaa 115  Q
    ||||| ||||||||||||||||| |||| ||| |||||||   ||||||||||||||||||    
T  28475458 gctacagcatattggagaaagattaggataatagttcataattcttgaacatttgctgaaa 28475398  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 115
Target Start/End: Original strand, 27995291 - 27995326
Alignment:
Q  80 ggagaattgttcatacggcttgaacatttgctgaaa 115  Q
    |||||||||||||||| |||||||||||||||||||    
T  27995291 ggagaattgttcatacagcttgaacatttgctgaaa 27995326  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 56366423 - 56366470
Alignment:
Q  304 gccgttcatagcattttaggggccttagacatagaatgaaaaatgacc 351  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||    
T  56366423 gccgttcctagcattttaggggccttaggcatagaatgaaaaatgacc 56366470  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 37548319 - 37548361
Alignment:
Q  304 gccgttcatagcattttaggggccttagacatagaatgaaaaa 346  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  37548319 gccgttcctagcattttaggggccttaggcatagaatgaaaaa 37548361  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 10015281 - 10015328
Alignment:
Q  304 gccgttcatagcattttaggggccttagacatagaatgaaaaatgacc 351  Q
    ||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  10015281 gccgttcctaacattttaggggccttaggcatagaatgaaaaaggacc 10015328  T

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Target: scaffold0065 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 66875 - 66833
Alignment:
Q  304 gccgttcatagcattttaggggccttagacatagaatgaaaaa 346  Q
    ||||||| |||||||||||||||||||| |||||||| |||||    
T  66875 gccgttcctagcattttaggggccttaggcatagaataaaaaa 66833  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 4090320 - 4090362
Alignment:
Q  304 gccgttcatagcattttaggggccttagacatagaatgaaaaa 346  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||    
T  4090320 gccgttcctagcattttaggggtcttaggcatagaatgaaaaa 4090362  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 32699314 - 32699273
Alignment:
Q  305 ccgttcatagcattttaggggccttagacatagaatgaaaaa 346  Q
    |||||| ||| |||||||||||||||| ||||||||||||||    
T  32699314 ccgttcctagtattttaggggccttaggcatagaatgaaaaa 32699273  T

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