View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_low_12 (Length: 398)
Name: NF20759_low_12
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 2904282 - 2904653
Alignment:
| Q |
8 |
attattcttgacctatattttaccgatcatattcttctagagattccacatgatttggtttttaaagttttcaatttttaaaaatattcttgtgtctaat |
107 |
Q |
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| T |
2904282 |
attatttttgacctatatttttccgatcatattcatctagagattccacatgatttggtttttaaagttttcaattttttaaaatattcttgtgtctaat |
2904381 |
T |
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| Q |
108 |
cttttgtgatcttatattattttttggatttcaaagatttaattacatccaaattgttggattcacagatgcagatagtcatgcaattctattccaacga |
207 |
Q |
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| T |
2904382 |
cttttgtgatcttatattattttttggatttcaaagatttaattgcatccaaattgttggattcacagatgcagattgtcatgcaattctattccaatga |
2904481 |
T |
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| Q |
208 |
ttagatttcttannnnnnnaattaacatatcatagattttatgatgtggttgtatctgaattttttataatttttgttgtggttatttattgcagtaacc |
307 |
Q |
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| T |
2904482 |
ttagatttcttatttttttaattaacatatcatagattttatgatgtggttgtatctgaattttttataatttttattgtggttatttgttgcagtaacc |
2904581 |
T |
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| Q |
308 |
actgctcaaagtgcactaacagcattgaacttgttgagagagaacaaaagcaattttgacctagtaatcagc |
379 |
Q |
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| T |
2904582 |
actgctcaaagtgcactaacagcattgaacttgttgagagaaaacaaaagcaattttgacctagtaatcagc |
2904653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 2888174 - 2888550
Alignment:
| Q |
8 |
attattcttgacctatattttaccgatcatattcttctagagattccacatgatttggtttttaaagttttcaatttttaaaaatattcttgtgtctaat |
107 |
Q |
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| T |
2888174 |
attatttttgacctatatttgaccgatcataatcttttagagattgcacatgatttg-tttttaaagttctcaatttttaaaaatattctagtgtctaat |
2888272 |
T |
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| Q |
108 |
cttttgtgatcttatatta-ttttttggatttcaaagatttaattacatccaaattgttggattcac-agatgcagatagtcatgcaattctattccaac |
205 |
Q |
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| T |
2888273 |
cttttgtgatcttatgttatttttttggatttcaaagatttaatttcatcaaaattgttggattcactagatgcagattgtcatgcaattcttccccaat |
2888372 |
T |
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| Q |
206 |
gattagatttcttannnnnnnaatt----aacatatcatagattttatgatgtggttgtatctgaattttttataatttttgttgtggttatttattgca |
301 |
Q |
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| T |
2888373 |
gattagatttcttatattttgaattaacaaacatatcatagattttattaattggttgtatctgaattttttataatttttgttgtggttatttgttgca |
2888472 |
T |
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| Q |
302 |
gtaaccactgctcaaagtgcactaacagcattgaacttgttgagagagaacaaaagcaattttgacctagtaatcagc |
379 |
Q |
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| T |
2888473 |
gtaaccactgctcatagtgcactaacagcactgaacttattgagagaaaacaaaagcaattttgacctagtaatcagc |
2888550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 2893066 - 2893145
Alignment:
| Q |
300 |
cagtaaccactgctcaaagtgcactaacagcattgaacttgttgagagagaacaaaagcaattttgacctagtaatcagc |
379 |
Q |
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| T |
2893066 |
cagtaaccactgctcaaaacgcgataacggcgttgaacctgttgagagaaaacaaaagcaattttgacctagtaatcagc |
2893145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 265
Target Start/End: Complemental strand, 48870912 - 48870670
Alignment:
| Q |
21 |
tatattttaccgatcatattcttctagagattccacatgatttggtttttaaagttttcaatttttaaaaatattcttgtgtctaatcttttgtgatctt |
120 |
Q |
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| T |
48870912 |
tatatttgaccgatcaaattctttgacagattggacatgatttggtttttaaagttcaca--tttaaaaaaaaaaattgtgtctaatcttttgtgatctt |
48870815 |
T |
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| Q |
121 |
atattattttttggatttcaaagatttaattacatccaaattgttggattca-cagatgcagatagtcatgcaattctattccaacgattagatttctta |
219 |
Q |
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| T |
48870814 |
atgttgttttttggatttcaaagattgaattgcatagaaattgttggattcattagatgcgggatgtaatgcaactcttttccaacgattagatttatta |
48870715 |
T |
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| Q |
220 |
nnnnnnnaattaacatatcatagattttatgatgtggttgtatctg |
265 |
Q |
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| T |
48870714 |
-tttttaaagtaacatttcatagattttatgttgtggttgtatctg |
48870670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 48870610 - 48870530
Alignment:
| Q |
301 |
agtaaccactgctcaaagtgcactaacagcattgaactt---gttgagagagaacaaaagcaattttgacctagtaatcag |
378 |
Q |
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| T |
48870610 |
agtaaccactgctcaaagtgcacgaacggcattgaacttgttgttgagagaaaacaaaaacaattttgacctagtaatcag |
48870530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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