View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20759_low_13 (Length: 387)

Name: NF20759_low_13
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20759_low_13
NF20759_low_13
[»] chr1 (4 HSPs)
chr1 (14-193)||(32604630-32604809)
chr1 (290-385)||(38835501-38835593)
chr1 (317-387)||(32605306-32605376)
chr1 (81-193)||(38318438-38318549)
[»] chr8 (6 HSPs)
chr8 (14-193)||(24956527-24956706)
chr8 (14-189)||(18176409-18176584)
chr8 (258-387)||(24957113-24957242)
chr8 (317-387)||(15587995-15588065)
chr8 (107-190)||(29564540-29564623)
chr8 (81-193)||(44506505-44506613)
[»] chr2 (4 HSPs)
chr2 (14-193)||(21022969-21023148)
chr2 (317-387)||(21022402-21022472)
chr2 (107-190)||(7230748-7230831)
chr2 (107-190)||(7230422-7230505)
[»] chr3 (5 HSPs)
chr3 (14-190)||(19607247-19607426)
chr3 (290-387)||(36332132-36332229)
chr3 (81-193)||(9787586-9787698)
chr3 (81-193)||(3590097-3590209)
chr3 (107-189)||(4576673-4576755)
[»] chr4 (8 HSPs)
chr4 (290-387)||(44743757-44743854)
chr4 (290-387)||(13091824-13091921)
chr4 (294-387)||(22591849-22591942)
chr4 (107-190)||(14641247-14641330)
chr4 (317-387)||(10154551-10154621)
chr4 (81-193)||(10012453-10012566)
chr4 (81-193)||(10019594-10019707)
chr4 (107-190)||(26110691-26110774)
[»] scaffold0438 (1 HSPs)
scaffold0438 (290-387)||(2935-3032)
[»] chr5 (1 HSPs)
chr5 (258-337)||(34962466-34962545)
[»] chr7 (2 HSPs)
chr7 (289-387)||(9789639-9789737)
chr7 (316-384)||(10094275-10094343)
[»] chr6 (2 HSPs)
chr6 (290-376)||(26332463-26332549)
chr6 (351-387)||(15668433-15668469)
[»] scaffold0005 (1 HSPs)
scaffold0005 (107-190)||(175962-176045)
[»] scaffold0020 (1 HSPs)
scaffold0020 (107-190)||(131180-131263)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 32604630 - 32604809
Alignment:
Q  14 tactacagatgtgcaacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttagccctgtggaaaatactcaatccaaaaagaaa 113  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32604630 tactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttagccctgtggaaaatactcaacccaaaaagaaa 32604729  T
Q  114 agaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaaaaac 193  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||    
T  32604730 agaaaggtttcaccaaatattggagagaaagtgacaaagggaaaggcaaaggttgggacaacaacaactatgagaaaaac 32604809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 385
Target Start/End: Original strand, 38835501 - 38835593
Alignment:
Q  290 atcgttcaattttatgatgtgctatgtttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataataatttata 385  Q
    ||||||||| ||||||||||| |||||||||||||||||||||   |||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  38835501 atcgttcaagtttatgatgtgttatgtttctaatattggatta---ccaaacgctttcaatttaatttatgataatgttttatataataatttata 38835593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 32605306 - 32605376
Alignment:
Q  317 ttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataataatttataaa 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||    
T  32605306 ttctaatattggattatttccaaactctttcaatttaatttatgataatgttttacataataatttataaa 32605376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 38318549 - 38318438
Alignment:
Q  81 agccctgtggaaaatactcaatccaaaaagaaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaa 180  Q
    |||| ||||||||| |||||||  ||||| ||||||| |||||| ||| |||| |  |||||||| | |||| | ||||||||||||| ||   || |||    
T  38318549 agccatgtggaaaacactcaataaaaaaataaaagaatggtttcgccaaatatggatgagaaagcaaaaaagagtaaggcaaaggttgtga-tacaccaa 38318451  T
Q  181 ctatgagaaaaac 193  Q
    |||||||||||||    
T  38318450 ctatgagaaaaac 38318438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 24956527 - 24956706
Alignment:
Q  14 tactacagatgtgcaacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttagccctgtggaaaatactcaatccaaaaagaaa 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24956527 tactacagatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttagccctgtggaaaatactcaacccaaaaagaaa 24956626  T
Q  114 agaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaaaaac 193  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||  |||||| ||||||||||||    
T  24956627 agaaaggtttcaccatatattggagtgaaagtgacaaagggaaaggcaaaggttgggacttcaacaattatgagaaaaac 24956706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 18176584 - 18176409
Alignment:
Q  14 tactacagatgtgcaacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttagccctgtggaaaatactcaatccaaaaagaaa 113  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  18176584 tactacagatgtgccacaagaaataattgactccgatgatagtgaatttgatattggtgaccactttagccctatggaaaatactcaacccaaaaagaaa 18176485  T
Q  114 agaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaa 189  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||    
T  18176484 agaaaagtttcaccagctattggagagaaagtgacaaagggaaaggcaaaggttgggacaacaacaactatgagaa 18176409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 258 - 387
Target Start/End: Original strand, 24957113 - 24957242
Alignment:
Q  258 agaattttgtattgatatttatgcaattttgtatcgttcaattttatgatgtgctatgtttctaatattggattatttccaaactctttcaatttaattt 357  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  24957113 agaattttgtattgatatttatgcaattttgcatcgttcaagtttatgatgtgttatgtttctaatattggattatttccaaactctttcaatttaatct 24957212  T
Q  358 atgacactgttttatataataatttataaa 387  Q
    || |||||||||||||||||||||||||||    
T  24957213 ataacactgttttatataataatttataaa 24957242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 15588065 - 15587995
Alignment:
Q  317 ttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataataatttataaa 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||    
T  15588065 ttctaatattggattatttccaaactctttcaatttaatttatgataatattttacataataatttataaa 15587995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 29564540 - 29564623
Alignment:
Q  107 aaagaaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaaa 190  Q
    ||||||||||||||||||||||||||| || |||||||  |||||||| |||   ||||||||||| |||||||| ||||||||    
T  29564540 aaagaaaagaaaggtttcaccagatatgggtgagaaagttacaaagggtaagaacaaggttgggactgcaacaacaatgagaaa 29564623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 44506505 - 44506613
Alignment:
Q  81 agccctgtggaaaatactcaatccaaaaagaaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaa 180  Q
    |||||| ||||||| |||||||| ||||| ||||||||||||||||||   ||    |||||||| |||||| | ||||||||||||||||| ||| ||     
T  44506505 agccctatggaaaacactcaatcaaaaaataaaagaaaggtttcaccaaggat----gagaaagcaacaaagagtaaggcaaaggttgggactgcaccag 44506600  T
Q  181 ctatgagaaaaac 193  Q
    |||||||||||||    
T  44506601 ctatgagaaaaac 44506613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 21023148 - 21022969
Alignment:
Q  14 tactacagatgtgcaacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttagccctgtggaaaatactcaatccaaaaagaaa 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  21023148 tactacaaatgtgccacaagaaataattgactctgatgatagtgaatttaatattggtgaccactttagccctatggaatatactcaacccaaaaagaaa 21023049  T
Q  114 agaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaaaaac 193  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||    
T  21023048 agaaaggtttcaccaaatattggagagaaagtgacaaagggaaaggcaaaggttgggacaacaacaactatgagaaaaac 21022969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 21022472 - 21022402
Alignment:
Q  317 ttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataataatttataaa 387  Q
    ||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||||||||||||||    
T  21022472 ttctaatattggattatttccaaactctttcaatttaatttataataatgttttacataataatttataaa 21022402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 7230748 - 7230831
Alignment:
Q  107 aaagaaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaaa 190  Q
    ||||||||||||||||||||||||||| || |||||||  |||||||| ||| | ||||||||||| |||||||||||||||||    
T  7230748 aaagaaaagaaaggtttcaccagatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaa 7230831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 7230422 - 7230505
Alignment:
Q  107 aaagaaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaaa 190  Q
    |||||||| |||||||||||||||||| || |||||||  |||||||| ||| | ||||||||||| |||||||||||||||||    
T  7230422 aaagaaaaaaaaggtttcaccagatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaa 7230505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 19607426 - 19607247
Alignment:
Q  14 tactacagatgtgcaacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttagccctgtggaaaatactcaatccaaaaagaaa 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| || |||||||| ||    
T  19607426 tactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttatccctctggaaaatactaaacccaaaaagtaa 19607327  T
Q  114 agaaaggtttcaccagatat---tggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaaa 190  Q
    ||||||||||||||||||||   | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  19607326 agaaaggtttcaccagatattaattgagagaaagtgacaaagggaaaggcaaaggttgggacgacaacaactatgagaaa 19607247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 36332132 - 36332229
Alignment:
Q  290 atcgttcaattttatgatgtgctatgtttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataataatttataaa 387  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  36332132 atcgttcaagtttatgatgtgttatgtttctaattttggattatttccaaacgctttcaatttaatttatgataatgttttatataataatttataaa 36332229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 9787698 - 9787586
Alignment:
Q  81 agccctgtggaaaatactcaatccaaaaagaaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaa 180  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||||| |||| |  |||||||| |||||| | ||| ||||||||||||| ||| ||     
T  9787698 agccctgtggaaaacactcaatcaaaaaataaaagaaaggtttcaccaaatatggatgagaaagcaacaaagagtaagacaaaggttgggactgcaccag 9787599  T
Q  181 ctatgagaaaaac 193  Q
    |||||||||||||    
T  9787598 ctatgagaaaaac 9787586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 3590097 - 3590209
Alignment:
Q  81 agccctgtggaaaatactcaatccaaaaagaaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaa 180  Q
    |||||||||||||| |||||||| ||||| | |||||||||||||||| |||| |  |||||||| |||||  | ||||||||||||||||| ||| ||     
T  3590097 agccctgtggaaaacactcaatcaaaaaatataagaaaggtttcaccaaatatggatgagaaagcaacaaataggaaggcaaaggttgggactgcaccag 3590196  T
Q  181 ctatgagaaaaac 193  Q
    |||||||||||||    
T  3590197 ctatgagaaaaac 3590209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 4576755 - 4576673
Alignment:
Q  107 aaagaaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaa 189  Q
    |||||||||||| |||||||||||||| || | |||||  |||||||| ||| |||||| ||||||  |||||||||||||||    
T  4576755 aaagaaaagaaatgtttcaccagatatgggtgtgaaagttacaaagggtaagacaaaggctgggactacaacaactatgagaa 4576673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 44743757 - 44743854
Alignment:
Q  290 atcgttcaattttatgatgtgctatgtttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataataatttataaa 387  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  44743757 atcgttcaagtttatgatgtgttatgtttctaatattggattatttccaaacgctttcaatttaatttatgataatgttttatataataatttataaa 44743854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 13091824 - 13091921
Alignment:
Q  290 atcgttcaattttatgatgtgctatgtttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataataatttataaa 387  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  13091824 atcgttcaagtttatgatgtgttatgtttctaatattggattattttcaaacgctttcaatttaatttatgataatgttttatataataatttataaa 13091921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 294 - 387
Target Start/End: Original strand, 22591849 - 22591942
Alignment:
Q  294 ttcaattttatgatgtgctatgtttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataataatttataaa 387  Q
    ||||| ||||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |  ||||||||||||||||||||||    
T  22591849 ttcaagtttataatgtgttatgtttctaatattggattattttcatactctttcaatttaatttatgataaagttttatataataatttataaa 22591942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 14641247 - 14641330
Alignment:
Q  107 aaagaaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaaa 190  Q
    ||||||||||||||||||||||||||| || |||||||  |||||||| ||| | ||||||||||| |||||||||||||||||    
T  14641247 aaagaaaagaaaggtttcaccagatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaa 14641330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 10154551 - 10154621
Alignment:
Q  317 ttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataataatttataaa 387  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||    
T  10154551 ttctaatattgaattatttccaaagtctttcaatttaatttatgataatgttttacataataatttataaa 10154621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 10012566 - 10012453
Alignment:
Q  81 agccctgtggaaaatactcaatccaaaaag-aaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaaca 179  Q
    |||||||||||||| | |||||| |||||  |||||||||||||||||| |||| |  |||||||| ||| || | ||||||||||||||||| ||| ||    
T  10012566 agccctgtggaaaacagtcaatcaaaaaaataaaagaaaggtttcaccaaatatggatgagaaagcaacatagagtaaggcaaaggttgggactgcacca 10012467  T
Q  180 actatgagaaaaac 193  Q
    ||||||||||||||    
T  10012466 actatgagaaaaac 10012453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 10019707 - 10019594
Alignment:
Q  81 agccctgtggaaaatactcaatccaaaaag-aaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaaca 179  Q
    |||||||||||||| | |||||| |||||  |||||||||||||||||| |||| |  |||||||| ||| || | ||||||||||||||||| ||| ||    
T  10019707 agccctgtggaaaacagtcaatcaaaaaaataaaagaaaggtttcaccaaatatggatgagaaagcaacatagagtaaggcaaaggttgggactgcacca 10019608  T
Q  180 actatgagaaaaac 193  Q
    ||||||||||||||    
T  10019607 actatgagaaaaac 10019594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 26110691 - 26110774
Alignment:
Q  107 aaagaaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaaa 190  Q
    ||||||||||||||||||||||||||| || |||||||  |||||||| |||   ||||||||||| |||||||| ||||||||    
T  26110691 aaagaaaagaaaggtttcaccagatatgggtgagaaagttacaaagggtaagatcaaggttgggactgcaacaacgatgagaaa 26110774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 2935 - 3032
Alignment:
Q  290 atcgttcaattttatgatgtgctatgtttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataataatttataaa 387  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  2935 atcgttcaagtttatgatgtgttatgtttctagtattggattatttccaaactctttcaatttaatttatgataatgtgttatataataatttataaa 3032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 258 - 337
Target Start/End: Original strand, 34962466 - 34962545
Alignment:
Q  258 agaattttgtattgatatttatgcaattttgtatcgttcaattttatgatgtgctatgtttctaatattggattatttcc 337  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  34962466 agaattttgtattgatatttatgcaattttgtatcgttcaagtttatgatgtgttatgtttctaatattggattatttcc 34962545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 289 - 387
Target Start/End: Complemental strand, 9789737 - 9789639
Alignment:
Q  289 tatcgttcaattttatgatgtgctatgtttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataataatttataaa 387  Q
    |||||||||| ||||||||||| ||||||| || ||||||||||||| ||||||||||||||||||||||||| | |||||| ||||||||||||||||    
T  9789737 tatcgttcaagtttatgatgtgttatgtttttagtattggattattttcaaactctttcaatttaatttatgataatgttttctataataatttataaa 9789639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 10094343 - 10094275
Alignment:
Q  316 tttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataataatttat 384  Q
    ||||||||| |||||||||| ||||||| ||| ||||||||||||| | ||||||||||||||||||||    
T  10094343 tttctaataatggattattttcaaactccttcgatttaatttatgataatgttttatataataatttat 10094275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 290 - 376
Target Start/End: Complemental strand, 26332549 - 26332463
Alignment:
Q  290 atcgttcaattttatgatgtgctatgtttctaatattggattatttccaaactctttcaatttaatttatgacactgttttatataa 376  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| || | ||||||||||||    
T  26332549 atcgttcaagtttatgatgtgttatgtttctaatgttggattattttcaaactctttcaatttaatttacgataatgttttatataa 26332463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 15668469 - 15668433
Alignment:
Q  351 ttaatttatgacactgttttatataataatttataaa 387  Q
    ||||||||||| | |||||||||||||||||||||||    
T  15668469 ttaatttatgataatgttttatataataatttataaa 15668433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 176045 - 175962
Alignment:
Q  107 aaagaaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaaa 190  Q
    ||||||||||||||||||||||||||| || |||||||  |||||||| ||| | ||||||||||| |||||||||||||||||    
T  176045 aaagaaaagaaaggtttcaccagatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaa 175962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 131180 - 131263
Alignment:
Q  107 aaagaaaagaaaggtttcaccagatattggagagaaagcgacaaagggaaaggcaaaggttgggacggcaacaactatgagaaa 190  Q
    ||||||||||||||||||||||||||| || |||||||  |||||| | ||| | ||||||||||| |||||||||||||||||    
T  131180 aaagaaaagaaaggtttcaccagatatgggtgagaaagttacaaagtgtaagaccaaggttgggactgcaacaactatgagaaa 131263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University