View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20759_low_17 (Length: 356)

Name: NF20759_low_17
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20759_low_17
NF20759_low_17
[»] chr8 (6 HSPs)
chr8 (75-340)||(5197308-5197572)
chr8 (201-340)||(5176019-5176158)
chr8 (19-80)||(5197159-5197220)
chr8 (98-151)||(5176225-5176278)
chr8 (39-80)||(31382410-31382451)
chr8 (287-340)||(21112577-21112630)
[»] chr1 (6 HSPs)
chr1 (39-80)||(25985806-25985847)
chr1 (38-80)||(18239269-18239311)
chr1 (287-340)||(2330501-2330554)
chr1 (287-340)||(36208551-36208604)
chr1 (287-340)||(52501904-52501957)
chr1 (288-340)||(48774217-48774269)
[»] chr4 (3 HSPs)
chr4 (39-80)||(35421823-35421864)
chr4 (39-80)||(53667715-53667756)
chr4 (287-340)||(55557957-55558010)
[»] chr2 (8 HSPs)
chr2 (39-80)||(9677022-9677063)
chr2 (39-80)||(31074456-31074497)
chr2 (203-248)||(27193982-27194027)
chr2 (203-248)||(27843796-27843841)
chr2 (39-80)||(35740613-35740654)
chr2 (161-248)||(35611163-35611251)
chr2 (285-340)||(24247156-24247211)
chr2 (287-340)||(24267903-24267956)
[»] chr3 (5 HSPs)
chr3 (38-80)||(12716147-12716189)
chr3 (287-340)||(10001741-10001794)
chr3 (287-340)||(10245618-10245671)
chr3 (287-340)||(11369973-11370026)
chr3 (288-340)||(10111933-10111985)
[»] scaffold0118 (2 HSPs)
scaffold0118 (287-340)||(24359-24412)
scaffold0118 (287-340)||(27552-27605)
[»] chr7 (1 HSPs)
chr7 (287-340)||(42233324-42233377)
[»] chr6 (2 HSPs)
chr6 (39-79)||(10900859-10900899)
chr6 (201-248)||(16015725-16015772)
[»] chr5 (3 HSPs)
chr5 (161-248)||(14191432-14191520)
chr5 (287-340)||(10026312-10026365)
chr5 (287-340)||(24628795-24628848)
[»] scaffold0262 (1 HSPs)
scaffold0262 (287-340)||(20337-20390)
[»] scaffold0003 (1 HSPs)
scaffold0003 (287-340)||(184143-184196)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 75 - 340
Target Start/End: Original strand, 5197308 - 5197572
Alignment:
Q  75 tatgacagcgaaaaaagaagggagggtaaaaatgacatggaagaggctgacaaattcagaagcttcttagacaagtannnnnnnnnaaatggttctgaga 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||    
T  5197308 tatgacagcgaaaaaagaagggagggtaaaaatgacatggaagaggctgacaaattcagaagcttcttagacaagtatttttttt-aaatggttctgaga 5197406  T
Q  175 tgagttactctcatttcctctccaccaaaagcttatgcaaaggaagtagagtcaaactactcacgttattgttgtaaatatgaataaaaagtgaacttca 274  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5197407 tgaattactctcatttcctctccaccaaaagcttatgcaaaggaagtagagtcaaactactcacgttattgttgtaaatatgaataaaaagtgaacttca 5197506  T
Q  275 ctgccaggacatgggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5197507 ctgccaggacatgggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 5197572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 340
Target Start/End: Complemental strand, 5176158 - 5176019
Alignment:
Q  201 aaaagcttatgcaaaggaagtagagtcaaactactcacgttattgttgtaaatatgaataaaaagtgaacttcactgccaggacatgggtgtgtatttta 300  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||   || | |||||||| | |||||    
T  5176158 aaaagcttatgaaaaggaagtagagtgaaactactcatgttattgttgtaaatatgaataaaaagagagcttcactaatagaatatgggtgtctttttta 5176059  T
Q  301 ggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    ||||||||| |||  | ||||| || ||||||||||||||    
T  5176058 ggatatagtaaagactgattagagtagtttaagtagttaa 5176019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 5197220 - 5197159
Alignment:
Q  19 tgttagtgctttccagatttaaaatcgatatgacaagggcctgctcttttcttcaatatgac 80  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  5197220 tgttagtgctttccggatttaaaatcaatatgacaagggcatgctcttttcttcaatatgac 5197159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 5176278 - 5176225
Alignment:
Q  98 gggtaaaaatgacatggaagaggctgacaaattcagaagcttcttagacaagta 151  Q
    |||||||||||||||||||||||||| | |||| | ||| ||||||||||||||    
T  5176278 gggtaaaaatgacatggaagaggctggcgaattaaaaagtttcttagacaagta 5176225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 31382410 - 31382451
Alignment:
Q  39 aaaatcgatatgacaagggcctgctcttttcttcaatatgac 80  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  31382410 aaaatcgatatgacaagggtcagctcttttcttcaatatgac 31382451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 21112577 - 21112630
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  21112577 gggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 21112630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 25985806 - 25985847
Alignment:
Q  39 aaaatcgatatgacaagggcctgctcttttcttcaatatgac 80  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25985806 aaaatcgatatgacaagggcctgctcttttcttcaatatgac 25985847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 18239311 - 18239269
Alignment:
Q  38 taaaatcgatatgacaagggcctgctcttttcttcaatatgac 80  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  18239311 taaaatcgatatgacaagggtctgctcttttcttcaatatgac 18239269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 2330554 - 2330501
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  2330554 gggtgtgttttttaggatatagtaaaggcttattagagtagtttaagtagttaa 2330501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 36208604 - 36208551
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  36208604 gggtgtgttttttaggatatagtaaaggttgattagagtagtttaagtagttaa 36208551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 52501957 - 52501904
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  52501957 gggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 52501904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 48774217 - 48774269
Alignment:
Q  288 ggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    ||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  48774217 ggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 48774269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 35421864 - 35421823
Alignment:
Q  39 aaaatcgatatgacaagggcctgctcttttcttcaatatgac 80  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  35421864 aaaatcgatatgacaagggtctgctcttttcttcaatatgac 35421823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 53667715 - 53667756
Alignment:
Q  39 aaaatcgatatgacaagggcctgctcttttcttcaatatgac 80  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  53667715 aaaatcgacatgacaagggcctgctcttttcttcaatatgac 53667756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 55557957 - 55558010
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  55557957 gggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 55558010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 9677063 - 9677022
Alignment:
Q  39 aaaatcgatatgacaagggcctgctcttttcttcaatatgac 80  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  9677063 aaaatcgatatgacaagggcctgcttttttcttcaatatgac 9677022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 31074456 - 31074497
Alignment:
Q  39 aaaatcgatatgacaagggcctgctcttttcttcaatatgac 80  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  31074456 aaaatcgatatgacaagggtctgctcttttcttcaatatgac 31074497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 27194027 - 27193982
Alignment:
Q  203 aagcttatgcaaaggaagtagagtcaaactactcacgttattgttg 248  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||    
T  27194027 aagcttatgcaaaggaagtagagagaaactactcatgttattgttg 27193982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 27843841 - 27843796
Alignment:
Q  203 aagcttatgcaaaggaagtagagtcaaactactcacgttattgttg 248  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||    
T  27843841 aagcttatgcaaaggaagtagagagaaactactcatgttattgttg 27843796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 35740654 - 35740613
Alignment:
Q  39 aaaatcgatatgacaagggcctgctcttttcttcaatatgac 80  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  35740654 aaaatcgatatgacaagggtctgctgttttcttcaatatgac 35740613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 35611251 - 35611163
Alignment:
Q  161 aaatggttctgagatgagtta-ctctcatttcctctccaccaaaagcttatgcaaaggaagtagagtcaaactactcacgttattgttg 248  Q
    ||||||||||||||| ||||| ||||| ||| |||   |  ||||||||||||||||||||| |||  |||||||||| ||||||||||    
T  35611251 aaatggttctgagatcagttatctctctttttctcaaaatgaaaagcttatgcaaaggaagtggagagaaactactcatgttattgttg 35611163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 24247211 - 24247156
Alignment:
Q  285 atgggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  24247211 atgggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 24247156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 24267903 - 24267956
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  24267903 gggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 24267956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 12716147 - 12716189
Alignment:
Q  38 taaaatcgatatgacaagggcctgctcttttcttcaatatgac 80  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  12716147 taaaatcgatatgacaagggtcagctcttttcttcaatatgac 12716189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 10001794 - 10001741
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  10001794 gggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 10001741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 10245671 - 10245618
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  10245671 gggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 10245618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 11370026 - 11369973
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| ||| |||||||||| |||||| ||||| || ||||||||||||||    
T  11370026 gggtgtgtttttaaggatatagtaaagggtgattagagtagtttaagtagttaa 11369973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 10111985 - 10111933
Alignment:
Q  288 ggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    ||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  10111985 ggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 10111933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 24359 - 24412
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| ||||||| || ||||||||||||||    
T  24359 gggtgtgttttttaggatatagtaaaggctaattagagtagtttaagtagttaa 24412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 27552 - 27605
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  27552 gggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 27605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 42233377 - 42233324
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| ||||||| || ||||||||||||||    
T  42233377 gggtgtgttttttaggatatagtaaaggctaattagagtagtttaagtagttaa 42233324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 10900859 - 10900899
Alignment:
Q  39 aaaatcgatatgacaagggcctgctcttttcttcaatatga 79  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  10900859 aaaatcgatatgacaagggtctactcttttcttcaatatga 10900899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 16015725 - 16015772
Alignment:
Q  201 aaaagcttatgcaaaggaagtagagtcaaactactcacgttattgttg 248  Q
    ||||||||||||||||||||| |||  |||||||||| ||||||||||    
T  16015725 aaaagcttatgcaaaggaagtggagagaaactactcatgttattgttg 16015772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 14191432 - 14191520
Alignment:
Q  161 aaatggttctgagatgagtta-ctctcatttcctctccaccaaaagcttatgcaaaggaagtagagtcaaactactcacgttattgttg 248  Q
    ||||||||||||||| ||||| ||||| ||| |||   |  ||||||||||||||||||||| |||  |||||||||| ||||||||||    
T  14191432 aaatggttctgagattagttatctctctttttctcaaaatgaaaagcttatgcaaaggaagtggagagaaactactcatgttattgttg 14191520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 10026365 - 10026312
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  10026365 gggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 10026312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 24628795 - 24628848
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  24628795 gggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 24628848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 20390 - 20337
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  20390 gggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 20337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 184196 - 184143
Alignment:
Q  287 gggtgtgtattttaggatatagtgaagggtaattagggttgtttaagtagttaa 340  Q
    |||||||| |||||||||||||| |||| | ||||| || ||||||||||||||    
T  184196 gggtgtgttttttaggatatagtaaaggctgattagagtagtttaagtagttaa 184143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University