View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_low_19 (Length: 350)
Name: NF20759_low_19
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 38833726 - 38833390
Alignment:
| Q |
18 |
ttactcacagctggacttccacatggtcctgacaaagtttttccatctggaccctaaaaatgccaagtttaatttttggttagtggcgtgtatcaatcaa |
117 |
Q |
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| T |
38833726 |
ttactcacagctggacttccacatggtcctgacaaagtttttccatctggaccctaaaaatgccaagtttaatttttggttagtggcgtgtaccaatcaa |
38833627 |
T |
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| Q |
118 |
aattaatttgtacacattcaccgtgtaaaacaaattacactataatgtcactttcttaaattagttttt----taccctgtgaggtttgcagggaagatc |
213 |
Q |
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| T |
38833626 |
aattaatttgtacacattcaccgtgtaaaacaaattacactataatgtcactttcttaaattagttttttacgtaccctgtgaggtttgcagggaagatc |
38833527 |
T |
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| Q |
214 |
ccaccattgatctccatttccttcaatggttcctgtaccattaagactcatttggtcaagtttatagaacacaagccattgatttctgctatctgcctct |
313 |
Q |
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| T |
38833526 |
ccaccattgatctccatttccttcaatggttcctgtaccattaagactcatttggtcaagtttatagaacacaagccattgatttctgctatctgcctct |
38833427 |
T |
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| Q |
314 |
ggccatgaatcaggtccatctggtgccattagcatac |
350 |
Q |
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| T |
38833426 |
ggccatgaatcaggtccatctggtgccattagcatac |
38833390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 186 - 342
Target Start/End: Original strand, 12318117 - 12318273
Alignment:
| Q |
186 |
ttaccctgtgaggtttgcagggaagatcccaccattgatctccatttccttcaatggttcctgtaccattaagactcatttggtcaagtttatagaacac |
285 |
Q |
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| T |
12318117 |
ttaccctatgaggtttgcaaggaagatcccaccattgttctccattgccttcaataattccagtcccatttagagtcatttgatcaagtctataaaacac |
12318216 |
T |
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| Q |
286 |
aagccattgatttctgctatctgcctctggccatgaatcaggtccatctggtgccat |
342 |
Q |
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| T |
12318217 |
aagccattggcttttactgtctgcctctggccaacaatttggtccatctggtgccat |
12318273 |
T |
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