View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_low_22 (Length: 324)
Name: NF20759_low_22
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_low_22 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 107 - 303
Target Start/End: Original strand, 6519074 - 6519270
Alignment:
| Q |
107 |
gatgactttcttaccatttgcattgtccttagcccgaagtataataaaaacataattgagcaatggaaggaggtaaaatggtgtattatattatatgaga |
206 |
Q |
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| T |
6519074 |
gatgactttcttaccatttgcattgtccttagcccgaagtataataaaaacataattgagcaatggaaggaggtaaaatggtgtattatattatatgaga |
6519173 |
T |
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| Q |
207 |
gataaatataccatttgtaaaatgggttatttaaaataattcatccctctctcaaaagaaatgataataattcatcctttcacatttaaaaaatata |
303 |
Q |
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| T |
6519174 |
gataaatataccatttgtaaaatgggttatttaaaataattcatccctctctcaaaagaaatgataataattcatcctttcacatttaaaaaatata |
6519270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 27452082 - 27451968
Alignment:
| Q |
138 |
gcccgaagtataataaaaacataattgagcaatggaaggaggtaaaatggtgtattatattatatgagagataaatatacc----atttgtaaaatgggt |
233 |
Q |
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| T |
27452082 |
gcccgaagtacaataaaaacataattgagcaatggaagggggcaaaatggtgtatcatatga---gagagataaatattcctccattttacaaaatgggt |
27451986 |
T |
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| Q |
234 |
tatttaaaataattcatc |
251 |
Q |
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| T |
27451985 |
tatttataataattcatc |
27451968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 8844 - 8731
Alignment:
| Q |
137 |
agcccgaagtataataaaaacataattgagcaatggaaggaggtaaaatggtgtattatattatatgagagataaatatacc----atttgtaaaatggg |
232 |
Q |
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| T |
8844 |
agccccaagtacaataaaaacataattgagaaatggaagggggcaaaatggtg-----tatcatatgagagataaattttcctccattttataaaatggg |
8750 |
T |
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| Q |
233 |
ttatttaaaataattcatc |
251 |
Q |
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| T |
8749 |
ttatttataataattcatc |
8731 |
T |
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