View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_low_23 (Length: 316)
Name: NF20759_low_23
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_low_23 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 18153238 - 18152958
Alignment:
| Q |
15 |
atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa |
114 |
Q |
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| T |
18153238 |
atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa |
18153139 |
T |
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| Q |
115 |
gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa |
214 |
Q |
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| T |
18153138 |
gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa |
18153039 |
T |
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| Q |
215 |
atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgg |
295 |
Q |
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| T |
18153038 |
atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgg |
18152958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 1785691 - 1785778
Alignment:
| Q |
208 |
tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgg |
295 |
Q |
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| T |
1785691 |
tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgg |
1785778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 222478 - 222749
Alignment:
| Q |
23 |
gaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaa |
122 |
Q |
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| T |
222478 |
gaggcttcaagaaaacttgtgttttcagaattatatgaagccagtaaagaaacaaaaaatccatgggtatttgaacccgagtacccgggaaaaagcagaa |
222577 |
T |
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| Q |
123 |
tatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaaatacatgg |
222 |
Q |
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| T |
222578 |
tatttgatggaagaacaggcgacccctttgagcaacctgttctaatagggaagtcctatatcttaaaattaattcatcaagttgatgagaaaattcatgg |
222677 |
T |
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| Q |
223 |
acgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacg |
294 |
Q |
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| T |
222678 |
gcgttctactgggccctactcacttgttacacaacaaccggttagaggaagagccaagcaagggggacaacg |
222749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 194 - 293
Target Start/End: Complemental strand, 23937344 - 23937245
Alignment:
| Q |
194 |
attcatcaagttgatgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaac |
293 |
Q |
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| T |
23937344 |
attcatcaagttgatgataaaatacatggacgtttcagtggacattatgcacttgttacacaacaaccccttaaaggaagggtgaaacaaggaggacaac |
23937245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 47586031 - 47586066
Alignment:
| Q |
130 |
tggaagaacagggaatctttttgaacagcctgttat |
165 |
Q |
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| T |
47586031 |
tggaagaacagggaatctttttgaacagcctgttat |
47586066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 22998273 - 22998200
Alignment:
| Q |
62 |
gccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaatatttgatggaag |
135 |
Q |
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| T |
22998273 |
gccaataaagaaacatccaatccatgaatatttcagcctaagtatccgggaaaaagcgaaatattttatggaag |
22998200 |
T |
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