View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_low_25 (Length: 264)
Name: NF20759_low_25
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 7037413 - 7037646
Alignment:
| Q |
14 |
gaagtacttcctcaatttgtgcctgatacacgggtagcttcttcccttgaaaaagataatacttgtatcaattatttactaagaaattattgttctttaa |
113 |
Q |
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| T |
7037413 |
gaagtacttcctcaatttgtgcctgatacacgggtagcttcttcccttgaaaaagataatacttgtatcaattatttactaagaaattattgttctttaa |
7037512 |
T |
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| Q |
114 |
aacagcaacgcaactcctcacctatatgtgtctctatcatttcaaaccatctcgcctcatttgggctcacaaaggaaatggcaactccagcaggagcagc |
213 |
Q |
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| T |
7037513 |
aacagcaaagcaactcctcacctatatgtgtctctatcatttcaaaccatctcgcctcatttgggctcacaaaggaaatggcaactccagtaggagcagc |
7037612 |
T |
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| Q |
214 |
ccgtcccacacagtgcatataatcctgtagttca |
247 |
Q |
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| T |
7037613 |
ctgtcccacatggtgcatataatcctgtagttca |
7037646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 111 - 244
Target Start/End: Original strand, 7876605 - 7876735
Alignment:
| Q |
111 |
taaaacagcaacgcaactcctcacctatatgtgtctctatcatttcaaaccatctcgcctcatttgggctcacaaaggaaatggcaactccagcaggagc |
210 |
Q |
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| T |
7876605 |
taaaacagcaaagcaactcctcacttatacgtgtctctatcatttcaaaccatctcgcctcatttgggttcacaaaggaaatggcaactccagcagg--- |
7876701 |
T |
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| Q |
211 |
agcccgtcccacacagtgcatataatcctgtagt |
244 |
Q |
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| T |
7876702 |
agcccgtcccacacggtgcatataatcctgtagt |
7876735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 1381374 - 1381418
Alignment:
| Q |
71 |
aatacttgtatcaattatttactaagaaattattgttctttaaaa |
115 |
Q |
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| T |
1381374 |
aatacttgtatcaattatttactatgacgtttttgttctttaaaa |
1381418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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