View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_low_29 (Length: 236)
Name: NF20759_low_29
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3541322 - 3541115
Alignment:
| Q |
1 |
agttaaaatagcaaaagttaattttaaaaaatacattgatttcacaaggataattttgtcatttatgatatatattttatcatgtcatcgctaagtgtgc |
100 |
Q |
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| T |
3541322 |
agttaaaatagcaaaagttaattttaaaaaatacattgatttcacaaggataattttgtcatttatgatatatattttatcatgtcatcgctaagtgtgc |
3541223 |
T |
|
| Q |
101 |
taaaaacttagtctgtt-ttttattatgtgtgcatatatcaaatactttatgtaatacatgtttatcatattatttacatcactagtttattttcttggt |
199 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3541222 |
taaaaacttagtctgtttttttattatgtgtg----gatcaaatacttt---------atgtttatcatattatttacatcactagtttattttcttggt |
3541136 |
T |
|
| Q |
200 |
tcaagtattacttacatatatc |
221 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
3541135 |
tcaagtattac-tacatatatc |
3541115 |
T |
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