View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_low_31 (Length: 226)
Name: NF20759_low_31
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_low_31 |
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| [»] chr7 (4 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 45243309 - 45243462
Alignment:
| Q |
71 |
catgcaaaaaccaaaggatactgtacctgatatcaaaattttgatgtccagacatcatttctcaatcaaaaaagtttaggtaccgatatcatgcgatggt |
170 |
Q |
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| T |
45243309 |
catgcaaaaaccaatggataca--acctgatatcaaaattttgatgtccagacatgatttctcaatcaaaaaagtttaagtaccgatatcatgtgatggt |
45243406 |
T |
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| Q |
171 |
atcattgaaatcaactgatatgcaaacattcagataaacaataagtaccttctctt |
226 |
Q |
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| T |
45243407 |
atcattgaaatcaactgatatgcaaacattcagataaacaacaagtaccttctctt |
45243462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 45230114 - 45230217
Alignment:
| Q |
122 |
acatcatttctcaatcaaaaaagtttaggtaccgata-tcatgcgatggtatcattgaaatcaactgatatgcaaacattcagataaacaataagtacct |
220 |
Q |
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| T |
45230114 |
acatcatttctcaatcaaaaaagtttaactcccgataatcatatgatgagatcattgaaatcaactgatacgcaaacattcagataaacaataaatacca |
45230213 |
T |
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| Q |
221 |
tctc |
224 |
Q |
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|||| |
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| T |
45230214 |
tctc |
45230217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 45243241 - 45243287
Alignment:
| Q |
7 |
gtttatccctatctctcttattctttatcttctagaacttacagata |
53 |
Q |
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| T |
45243241 |
gtttatccctatctctcttattctttatcttctagaacttacagata |
45243287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 45237442 - 45237480
Alignment:
| Q |
98 |
tgatatcaaaattttgatgtccagacatcatttctcaat |
136 |
Q |
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| T |
45237442 |
tgatatcaaaactttgatgtccaaacatcatttctcaat |
45237480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 226
Target Start/End: Complemental strand, 8576716 - 8576686
Alignment:
| Q |
196 |
acattcagataaacaataagtaccttctctt |
226 |
Q |
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| T |
8576716 |
acattcagataaacaataagtaccttctctt |
8576686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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