View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_low_33 (Length: 205)
Name: NF20759_low_33
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 36757487 - 36757664
Alignment:
| Q |
12 |
gtaaattattctttttggacgaggtttgaaaatagcacctctaaaaataaaaacacaaatttcacacctataattttagattcttcataattatccgtca |
111 |
Q |
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| T |
36757487 |
gtaaattattctttttggacgaggtttgaaaatagcacctctaaaaataaaaacacaaatttcacacctataattttagatttttcataattatccatca |
36757586 |
T |
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| Q |
112 |
ccttgtgataaaaatatttttcaaatagcctctgcaatctgggcgaggtctgaaaatagaccttataaaggctaaaat |
189 |
Q |
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| T |
36757587 |
ccctgtgataaaaatatttttcaaatagcctctgcaatctgggcgaggtctgaaaataggccttataaaggctaaaat |
36757664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 9419653 - 9419589
Alignment:
| Q |
36 |
tttgaaaatagcacctctaaaaataaaaacacaaatttcacacctataattttagattcttcata |
100 |
Q |
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| T |
9419653 |
tttgaaaatagctcttgtaaaaataaaaacacaaatttcaccactataattttggattcttcata |
9419589 |
T |
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