View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20759_low_6 (Length: 554)
Name: NF20759_low_6
Description: NF20759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20759_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 16 - 538
Target Start/End: Original strand, 25064064 - 25064587
Alignment:
| Q |
16 |
aatacttgaagaactgcaattaagttgccttcaacatgcatatgttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattcca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064064 |
aatacttgaagaactgcaattaagttgccttcaacatgcatatgttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattcca |
25064163 |
T |
|
| Q |
116 |
agcagcatatcccctcaaaactatatcagcctacatcaaatcaatgttaggttttccnnnnnnn-ttgtgagagtgatataagttttataatttctaata |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
25064164 |
agcagcatatcccctcaaaactatatcagcctacatcaaatcaatgttaggttttccaaaaaaaattgtgacagtgatataagttttataatttctaata |
25064263 |
T |
|
| Q |
215 |
tttgcctatatatgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacacattatattttgaaagactga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
25064264 |
tttgcctatatatgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagaccga |
25064363 |
T |
|
| Q |
315 |
agagacttttgatattctagaacatagattcgaactcgttttttctcatttggtgtgtgatcttggtcactagactcttttatttcgaaaatgcacataa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25064364 |
agagacttttgatattctagaacatagattcgaactcgttttttttcatttggtgtgtgatcttggtcactagactcttttatttcgaaaatgtacataa |
25064463 |
T |
|
| Q |
415 |
ccaataaaacgttacggtattaatagtcagaggaagaaataataataccttacgagcgtacaagtgagaaagtgtagctccccaaccttcatagtaactg |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064464 |
ccaataaaacgttacggtattaatagtcagaggaagaaataataataccttacgagcgtacaagtgagaaagtgtagctccccaaccttcatagtaactg |
25064563 |
T |
|
| Q |
515 |
tattgaacaattgatgaaccaaac |
538 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
25064564 |
tattgaacaattgatgaaccaaac |
25064587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 227 - 538
Target Start/End: Original strand, 25085702 - 25086020
Alignment:
| Q |
227 |
tgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacacattatattttgaaagactgaagagacttttga |
326 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| |
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| T |
25085702 |
tgtgattatctaaaatcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagaccgaaaagacttttga |
25085801 |
T |
|
| Q |
327 |
tattctagaacatagattcgaactcgttttttctcatttggtgtgtgatcttggtcac-------tagactcttttatttcgaaaatgcacataaccaat |
419 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
25085802 |
tattctagaacatagattcgaactcgttttttcttatttggtgtgtgatcttggtcactactcactagactcttttatttcgaaaatgtacataaccaat |
25085901 |
T |
|
| Q |
420 |
aaaacgttacggtattaatagtcagaggaagaaataataataccttacgagcgtacaagtgagaaagtgtagctccccaaccttcatagtaactgtattg |
519 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25085902 |
taaactttacggtattgatagtcagaggaagaaataataataccttacgagcgtacaagtgagaaagtgtagctccccaaccttcatagtaactgtattg |
25086001 |
T |
|
| Q |
520 |
aacaattgatgaaccaaac |
538 |
Q |
| |
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||||||||||||||||||| |
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| T |
25086002 |
aacaattgatgaaccaaac |
25086020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 60 - 227
Target Start/End: Original strand, 25085492 - 25085664
Alignment:
| Q |
60 |
ttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactatatcagcctacatcaaatcaa |
159 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
25085492 |
ttcaataccttaggaaatattttatccaaaacttgcagagcacgccttgaattccaagcagcatatccccgcaaaactatatcagcctacattaaatcaa |
25085591 |
T |
|
| Q |
160 |
tgttaggttttccnnnnnnnttgtgagagtgatataag-----ttttataatttctaatatttgcctatatat |
227 |
Q |
| |
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|||||||| |||| |||||||||||||||||| ||||||||||||||||| |||| ||||||| |
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| T |
25085592 |
tgttaggtcttccaaaaaatttgtgagagtgatataagtttaattttataatttctaataattgcatatatat |
25085664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 25091386 - 25091489
Alignment:
| Q |
60 |
ttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactatatcagcctacatcaaatcaa |
159 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25091386 |
ttcaataccttgggaaatattttatccaaaacttggagagcatgccttgaagtccaagcagcatatcccctcaaaactatatcagcctacatcaaatcaa |
25091485 |
T |
|
| Q |
160 |
tgtt |
163 |
Q |
| |
|
|||| |
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|
| T |
25091486 |
tgtt |
25091489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 443 - 538
Target Start/End: Original strand, 25074278 - 25074373
Alignment:
| Q |
443 |
agaggaagaaataataataccttacgagcgtacaagtgagaaagtgtagctccccaaccttcatagtaactgtattgaacaattgatgaaccaaac |
538 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25074278 |
agaggaagaaataataataccttgcgagcatacaagtgagaaagagtagctccccaaccttcatagtaactgtattgaacaattgaagaaccaaac |
25074373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 25073824 - 25073946
Alignment:
| Q |
41 |
tgccttcaacatgcatatgttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactata |
140 |
Q |
| |
|
||||||||||| ||||| ||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |
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| T |
25073824 |
tgccttcaacaatcatatacacaataccttggaaaatattttatccaaaacttggagagcatgccttgaattccaaccagcatatccccgtaaaagtata |
25073923 |
T |
|
| Q |
141 |
tcagcctacatcaaatcaatgtt |
163 |
Q |
| |
|
||||||| | ||||| ||||||| |
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| T |
25073924 |
tcagcctgcgtcaaaccaatgtt |
25073946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 25074029 - 25074103
Alignment:
| Q |
180 |
ttgtgagagtgatataagttttataatttctaatatttgcctatatatgtgattatctaaactcttatttttcat |
254 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
25074029 |
ttgtgatagtgatataagttttaaaatttctaatatttgccaatatatgtgattatctaaaatcttatttttcat |
25074103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 460 - 538
Target Start/End: Original strand, 25091829 - 25091907
Alignment:
| Q |
460 |
taccttacgagcgtacaagtgagaaagtgtagctccccaaccttcatagtaactgtattgaacaattgatgaaccaaac |
538 |
Q |
| |
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|||||||||||| |||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||| ||||||||| |
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|
| T |
25091829 |
taccttacgagcatacaagtgagtaagagtagctccccaaccttgatagtaactgtgttgaacaattgaagaaccaaac |
25091907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 25091574 - 25091673
Alignment:
| Q |
180 |
ttgtgagagtgatataagttttataatttctaatatttgcctatatatgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaa |
279 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||||||| || ||||||||||| ||||||| ||| |||||||||||| |||||| |||||||||||| |
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| T |
25091574 |
ttgtgatagtgatataagttttaaaatgtctaatattttccaatatatgtgatcatctaaaatctcatttttcatagggaatatt---ttataagtgaaa |
25091670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 25059322 - 25059412
Alignment:
| Q |
61 |
tcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactatatcagcctacat |
151 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| ||| || || ||||||||||| |||||||||||| ||||||||||||| ||||||| |
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| T |
25059322 |
tcaataccttaggaaaaatatcatccacaacttgtagaccacgcgttgaattccaaccagcatatccccgcaaaactatatcaacctacat |
25059412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 538
Target Start/End: Original strand, 25060775 - 25060873
Alignment:
| Q |
443 |
agaggaagaaataataataccttacgagcgtacaagtgagaaagtgtagctccccaaccttca---tagtaactgtattgaacaattgatgaaccaaac |
538 |
Q |
| |
|
|||||||| ||| | | |||||||||| ||||||| |||| ||| |||||||||||||||||| || | | ||||||||||||| || ||||||||| |
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| T |
25060775 |
agaggaaggaattagagtaccttacgaccgtacaaatgagcaagagtagctccccaaccttcaccataatgattgtattgaacaatggaagaaccaaac |
25060873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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