View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2075_low_1_N (Length: 569)
Name: NF2075_low_1_N
Description: NF2075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2075_low_1_N |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 125 - 559
Target Start/End: Original strand, 10573649 - 10574074
Alignment:
| Q |
125 |
tgtctcacacataagctctccttcatttcctttcccattcaaatcaaatcgtgttgaagtctccacaaacacacaattttgctcttccatgtcttccctg |
224 |
Q |
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| T |
10573649 |
tgtctcacacataaactctacttcatttcctttcccattcaaatcaaatcgtgttgaagtctccacaaacacacaattttgctcttccatgtcgtccctg |
10573748 |
T |
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| Q |
225 |
caaaataaaatatgacaatatgaccatcagcaacnnnnnnnnnnnntggaaaatagagaaagagttactcaaatcatggttctggctctatatattaagg |
324 |
Q |
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| T |
10573749 |
caaaataaaatatggc--------catcagcaacaaataaaaaaa-tggaaaatagagaaagagttactcaaatcatggttctgactctatatattaagg |
10573839 |
T |
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| Q |
325 |
atatataacaaataaaatcagattttgtttagtgatgttggaagacaatacaatattttattattaatcatatatagtttgaattctaataatgtcaatt |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10573840 |
atatataacaaataaaatcagattttgtttagtgatgttggaagacactacaatattttattattaatcatatatagtttgaattctaataatgtcaatt |
10573939 |
T |
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| Q |
425 |
aaaatattctccaactctattcacgtgatactcgtgagctacgttatgtataaattacttttcnnnnnnnnnnnnnnnncattatatatacgttaatcat |
524 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10573940 |
aaaatattctccaactctattcacgtgatactcgtgagctacgttatgtataaattacttttcaaaacaaaacaaaaaacattatatatacgttaatcat |
10574039 |
T |
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| Q |
525 |
agtttgaattatgtcaaaacaaaatttaccctttg |
559 |
Q |
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| T |
10574040 |
agtttgaattatgtcaaaacaaaatttaccctttg |
10574074 |
T |
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