View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2075_low_4 (Length: 266)
Name: NF2075_low_4
Description: NF2075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2075_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 48366226 - 48366027
Alignment:
| Q |
44 |
agaaggctgtatctgatattgagctcttcaaatattcttttaacttccatcactagttcacttttcctattcaccttctctccaaactcttgaaagttca |
143 |
Q |
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| T |
48366226 |
agaaggctgtatctgatattgagctcttcaaatattcttttaacttccatcactagttcacttttcctattcaccttctctccaaactcttgaaagttca |
48366127 |
T |
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| Q |
144 |
ttgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatgccagtattgtggattcatctc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48366126 |
ttgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatgccagtattgtggattcctctc |
48366027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 52 - 243
Target Start/End: Original strand, 48396333 - 48396524
Alignment:
| Q |
52 |
gtatctgatattgagctcttcaaatattcttttaacttccatcactagttcacttttcctattcaccttctctccaaactcttgaaagttcattgtgtga |
151 |
Q |
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| T |
48396333 |
gtatctgatattgagctcttcaaatattttctttacttccatcactaattcacttctccgcttagtcttctccccaaattcttgaaagttcattgtgtga |
48396432 |
T |
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| Q |
152 |
gtaacataaagacccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatgccagtattgtggattcatctc |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |||||| ||||||||||||||||||||||| |||| |
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| T |
48396433 |
gtaacataaagacccatcttaatcttatttacattttcaatctccttcactgccaaactgaaactaggatgccagtattgtggattcctctc |
48396524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 48385756 - 48385557
Alignment:
| Q |
44 |
agaaggctgtatctgatattgagctcttcaaatattcttttaacttccatcactagttcacttttcctattcaccttctctccaaactcttgaaagttca |
143 |
Q |
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|||||| ||||||| |||||||| |||||||||||| | || |||||||| |||||||||||| ||| || ||||||||||||||||||||| |||| |
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| T |
48385756 |
agaaggttgtatcttatattgagatcttcaaatattttctttacttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattca |
48385657 |
T |
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| Q |
144 |
ttgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatgccagtattgtggattcatctc |
243 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
48385656 |
ttgtgtgagtaacaaaaagacccatcttaatattatttacattttcaatctccttcactaccaatccaaaattaggatgccagtattgtggattcttctc |
48385557 |
T |
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