View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20760_high_11 (Length: 411)
Name: NF20760_high_11
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 396
Target Start/End: Original strand, 12507205 - 12507585
Alignment:
| Q |
14 |
attattctctcaaatgctcaatagatccaaaaagacaccacgtgctataaagagcctaaagtgaaatgataataacatagttgcaaaaaataaataaata |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12507205 |
attattctctcaaatgctcaatagatccaaaaatacaccacgtgctataaagagcctaaagtgaaatgataataacatagttgcaaaaaataaataaata |
12507304 |
T |
|
| Q |
114 |
aagatattaattatgctctttaagtaaaaagtattgccaatatattttcattccaaagatgtttaattacaatcacaaatatactttggcatatctatct |
213 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12507305 |
aaaatattaattatgctctttaagtaaaaagtattgccaatatattttcattccaaagatgtttaattacaatcacaaatatactttggcatatctatct |
12507404 |
T |
|
| Q |
214 |
atataatttgcagcaactcaaattaacatagttgcatccaagactttacatataaaatcgatttgaaaagagagttcatttttcagccaaattttcattt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12507405 |
atataatttgcagcaactcaaattaacatagttgcatccaagactttacatataaaatcgatttgaaatgagagttcatttttcagccaaattttcattt |
12507504 |
T |
|
| Q |
314 |
atcattaatttcatattctttggcataattaaactaaacacttttctcatataaaactaaagttttgttctgtatgtacatac |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12507505 |
atcattaatttcatattctttggcataattaaactaa--acttttctcatataaaactaaagttttgttctgtatgtacatac |
12507585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University