View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20760_high_19 (Length: 257)

Name: NF20760_high_19
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20760_high_19
NF20760_high_19
[»] scaffold0035 (2 HSPs)
scaffold0035 (116-241)||(82452-82578)
scaffold0035 (16-115)||(82324-82423)
[»] chr8 (12 HSPs)
chr8 (116-241)||(1658535-1658661)
chr8 (116-241)||(14031071-14031197)
chr8 (116-240)||(415804-415929)
chr8 (116-241)||(6336483-6336609)
chr8 (116-241)||(36802503-36802629)
chr8 (116-241)||(37401527-37401653)
chr8 (16-115)||(415676-415775)
chr8 (16-115)||(1658407-1658506)
chr8 (16-115)||(6336355-6336454)
chr8 (16-115)||(14031226-14031325)
chr8 (16-115)||(36802375-36802474)
chr8 (19-115)||(37401682-37401778)
[»] chr7 (6 HSPs)
chr7 (116-241)||(5095825-5095951)
chr7 (116-241)||(24051962-24052088)
chr7 (116-241)||(39752907-39753033)
chr7 (16-115)||(5095980-5096079)
chr7 (16-115)||(24052117-24052216)
chr7 (16-115)||(39753062-39753158)
[»] chr5 (10 HSPs)
chr5 (116-241)||(41874744-41874870)
chr5 (116-241)||(28393971-28394097)
chr5 (116-241)||(31171603-31171729)
chr5 (116-241)||(27263143-27263269)
chr5 (16-115)||(41874899-41874998)
chr5 (16-112)||(31171761-31171857)
chr5 (16-115)||(27263298-27263397)
chr5 (16-115)||(28394126-28394225)
chr5 (171-237)||(40500714-40500781)
chr5 (116-155)||(40500783-40500822)
[»] chr4 (8 HSPs)
chr4 (116-241)||(23316532-23316658)
chr4 (116-241)||(25921608-25921734)
chr4 (116-241)||(22160984-22161110)
chr4 (116-241)||(50996679-50996805)
chr4 (16-115)||(22160856-22160955)
chr4 (16-115)||(23316404-23316503)
chr4 (16-115)||(25921480-25921579)
chr4 (16-115)||(50996551-50996650)
[»] chr3 (10 HSPs)
chr3 (116-241)||(44176325-44176451)
chr3 (116-241)||(44183008-44183134)
chr3 (116-241)||(33705947-33706073)
chr3 (116-241)||(37980919-37981045)
chr3 (16-115)||(3807164-3807263)
chr3 (16-115)||(44176480-44176579)
chr3 (16-115)||(44183163-44183262)
chr3 (16-115)||(33706102-33706201)
chr3 (16-115)||(37980792-37980890)
chr3 (185-241)||(3807300-3807357)
[»] chr1 (2 HSPs)
chr1 (118-241)||(8027992-8028116)
chr1 (16-83)||(8028180-8028248)
[»] chr2 (6 HSPs)
chr2 (116-241)||(2383718-2383844)
chr2 (116-241)||(36214401-36214527)
chr2 (116-240)||(40323688-40323813)
chr2 (16-115)||(2383590-2383689)
chr2 (16-115)||(36214269-36214368)
chr2 (18-115)||(40323842-40323939)
[»] chr6 (2 HSPs)
chr6 (118-242)||(13847170-13847295)
chr6 (16-84)||(13847039-13847107)


Alignment Details
Target: scaffold0035 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 82452 - 82578
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  82452 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 82551  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  82552 ttgcatcgtttttgctgaaccaagaag 82578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 82324 - 82423
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  82324 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 82423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 1658535 - 1658661
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1658535 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 1658634  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  1658635 ttgcatcgtttttgctgaaccaagaag 1658661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 14031197 - 14031071
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14031197 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 14031098  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  14031097 ttgcatcgtttttgctgaaccaagaag 14031071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 415804 - 415929
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  415804 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 415903  T
Q  216 ttgcatc-tttttgctgaaccaagaa 240  Q
    ||||||| ||||||||||||||||||    
T  415904 ttgcatcgtttttgctgaaccaagaa 415929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 6336483 - 6336609
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6336483 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattctaatttttaactcaattcatcttcctatagat 6336582  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  6336583 ttgcatcgtttttgctgaaccaagaag 6336609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 36802503 - 36802629
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36802503 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 36802602  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||| ||| |||||||||||||||||||    
T  36802603 ttgtatcatttttgctgaaccaagaag 36802629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 37401653 - 37401527
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37401653 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctataaat 37401554  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  37401553 ttgcatcgtttttgctgaaccaagaag 37401527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 415676 - 415775
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  415676 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 415775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 1658407 - 1658506
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  1658407 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 1658506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 6336355 - 6336454
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  6336355 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 6336454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 14031325 - 14031226
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  14031325 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 14031226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 36802375 - 36802474
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  36802375 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 36802474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 37401778 - 37401682
Alignment:
Q  19 cataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  37401778 cataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 37401682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 5095951 - 5095825
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5095951 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 5095852  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  5095851 ttgcatcgtttttgctgaaccaagaag 5095825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 24052088 - 24051962
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24052088 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 24051989  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  24051988 ttgcatcgtttttgctgaaccaagaag 24051962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 39753033 - 39752907
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39753033 tcttttctcccacgtcaagaatatcactttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 39752934  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  39752933 ttgcatcgtttttgctgaaccaagaag 39752907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 5096079 - 5095980
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  5096079 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 5095980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 24052216 - 24052117
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  24052216 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 24052117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 39753158 - 39753062
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    ||||||||||||||||||||| |||||   || ||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||||    
T  39753158 atccataatcatcaatcaacatcaaga---tccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttgcataat 39753062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 41874870 - 41874744
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41874870 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 41874771  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  41874770 ttgcatcgtttttgctgaaccaagaag 41874744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 28394097 - 28393971
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28394097 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 28393998  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||| ||||||||||||    
T  28393997 ttgcatcgtttttgttgaaccaagaag 28393971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 31171729 - 31171603
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31171729 tcttttctcccacgtcaagaatatctctttgcttcttcttattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 31171630  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  31171629 ttgcatcgtttttgctgaaccaagaag 31171603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 27263269 - 27263143
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27263269 tcttttctcccacgtcaagaatatctatttgcttattctaattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 27263170  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  27263169 ttgcatcgtttttgctgaaccaagaag 27263143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 41874998 - 41874899
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  41874998 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 41874899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 31171857 - 31171761
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacat 112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  31171857 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacat 31171761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 27263397 - 27263298
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  27263397 atccataatcatcaatcaacaacaagaagatccaatattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 27263298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 28394225 - 28394126
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||       ||||||||||||||||||||||||    
T  28394225 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatatataaatttaaagaaatttttttaagattcttatgttgttacataat 28394126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 40500781 - 40500714
Alignment:
Q  171 ttccttattattccaatttttaactcaattcatcttcctatagatttgcat-ctttttgctgaaccaa 237  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||| ||||| ||||||||| ||||||    
T  40500781 ttccttattattccaatttccaacccaattcctcttcctatagatctgcatcctttttgctcaaccaa 40500714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 40500822 - 40500783
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctg 155  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  40500822 tcttttctccaacgtcaagaatatctctttgcttcttctg 40500783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 23316532 - 23316658
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23316532 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 23316631  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  23316632 ttgcatcgtttttgctgaaccaagaag 23316658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 25921608 - 25921734
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25921608 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 25921707  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  25921708 ttgcatcgtttttgctgaaccaagaag 25921734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 22160984 - 22161110
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22160984 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattctaatttttaactcaattcatcttcctatagat 22161083  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  22161084 ttgcatcgtttttgctgaaccaagaag 22161110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 50996679 - 50996805
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50996679 tcttttctcccacgtcaagaatatctctttgcttattctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 50996778  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||| ||||||||||    
T  50996779 ttgcatcgtttttgctaaaccaagaag 50996805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 22160856 - 22160955
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  22160856 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 22160955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 23316404 - 23316503
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  23316404 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 23316503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 25921480 - 25921579
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  25921480 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 25921579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 50996551 - 50996650
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||| |||||||||    
T  50996551 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttcttacataat 50996650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 44176451 - 44176325
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44176451 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 44176352  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  44176351 ttgcatcgtttttgctgaaccaagaag 44176325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 44183134 - 44183008
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44183134 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 44183035  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  44183034 ttgcatcgtttttgctgaaccaagaag 44183008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 33706073 - 33705947
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33706073 tcttttctcccacgtcaagaatatctctttgcttcttcttattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 33705974  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  33705973 ttgcatcgtttttgctgaaccaagaag 33705947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 37980919 - 37981045
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  37980919 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttctaacccaattcatcttcctatagat 37981018  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  37981019 ttgcatcgtttttgctgaaccaagaag 37981045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 3807164 - 3807263
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  3807164 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 3807263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 44176579 - 44176480
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  44176579 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 44176480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 44183262 - 44183163
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  44183262 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 44183163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 33706201 - 33706102
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  33706201 atccataatcatcaatcaacaacaagaatatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 33706102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 37980792 - 37980890
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||       ||||||||||||||||||||||||    
T  37980792 atccataatcatcaatcaacagcaagaagatccaacattttaaaaaataaatagataaatttaaa-gaatttttttaagattcttatgttgttacataat 37980890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 3807300 - 3807357
Alignment:
Q  185 aatttttaactcaattcatcttcctatagatttgcatc-tttttgctgaaccaagaag 241  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  3807300 aatttttaactcaattcatcttcctatagatttgcatcgtttttgttgaaccaagaag 3807357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 8028116 - 8027992
Alignment:
Q  118 ttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagattt 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8028116 ttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagattt 8028017  T
Q  218 gcatc-tttttgctgaaccaagaag 241  Q
    ||||| |||||||||||||||||||    
T  8028016 gcatcgtttttgctgaaccaagaag 8027992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 8028248 - 8028180
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaa-aaaataaatagataaatttaaagga 83  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  8028248 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaaataaatagataaatttaaagga 8028180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 2383718 - 2383844
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2383718 tcttttttcccacgacaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 2383817  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  2383818 ttgcatcgtttttgctgaaccaagaag 2383844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 36214401 - 36214527
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  36214401 tcttttctcccacgtcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttctaacccaattcatcttcctatagat 36214500  T
Q  216 ttgcatc-tttttgctgaaccaagaag 241  Q
    ||||||| |||||||||||||||||||    
T  36214501 ttgcatcgtttttgctgaaccaagaag 36214527  T

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Target: chr2; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 40323813 - 40323688
Alignment:
Q  116 tcttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 215  Q
    |||||||||| || |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40323813 tcttttctcctacgtcaagaatatatctttacttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagat 40323714  T
Q  216 ttgcatc-tttttgctgaaccaagaa 240  Q
    ||||||| ||||||||||||||||||    
T  40323713 ttgcatcgtttttgctgaaccaagaa 40323688  T

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Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 2383590 - 2383689
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  2383590 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 2383689  T

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Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 36214269 - 36214368
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  36214269 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 36214368  T

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Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 40323939 - 40323842
Alignment:
Q  18 ccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaannnnnnnaagattcttatgttgttacataat 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  40323939 ccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaatttttttaagattcttatgttgttacataat 40323842  T

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Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 13847170 - 13847295
Alignment:
Q  118 ttttctcccacatcaagaatatctctttgcttcttctgattcatattcattcattccttattattccaatttttaactcaattcatcttcctatagattt 217  Q
    ||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13847170 ttttctcccatgtcaagaatatctctttccttcttctgattcatattcattcattccttattattccaatttttaacacaattcatcttcctatagattt 13847269  T
Q  218 gcatc-tttttgctgaaccaagaagt 242  Q
    ||||| ||||||||||||||| ||||    
T  13847270 gcatcgtttttgctgaaccaaaaagt 13847295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 13847039 - 13847107
Alignment:
Q  16 atccataatcatcaatcaacaacaagaagatctaacattttaaaaaataaatagataaatttaaaggaa 84  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13847039 atccataatcatcaatcaacaacaagaagatccaacattttaaaaaataaatagataaatttaaaggaa 13847107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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