View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20760_high_21 (Length: 255)
Name: NF20760_high_21
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_high_21 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 44145504 - 44145755
Alignment:
| Q |
1 |
acataggatggaaacgacctcagtaaggttggatcaagcgcaacagcgacggttccggcaaggatttgggtcatatttccggttgtggtggtatttttcg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44145504 |
acataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtggtatttttcg |
44145603 |
T |
|
| Q |
101 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44145604 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
44145703 |
T |
|
| Q |
201 |
gcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
44145704 |
gcttggagggagcattttgatcatctta-tgtggaaagtgactcgaagatatt |
44145755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 117 - 253
Target Start/End: Complemental strand, 38560902 - 38560766
Alignment:
| Q |
117 |
tggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatggcttggagggagcatt |
216 |
Q |
| |
|
|||||||||||||||||| |||| || |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38560902 |
tggattaaaggctacactgagaatatcggagtttgtgatgccttacatgttgagatgtgggggttgtatttgggtatagagatggtttggagggagcatt |
38560803 |
T |
|
| Q |
217 |
ttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
||||||||||||| |||||||||| || ||||||||| |
|
|
| T |
38560802 |
ttgatcatcttatagtggaaagtggctcgaagatatt |
38560766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 1635890 - 1636037
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
1635890 |
tttttcgtgattcagacggtaaatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggactatatttgggttt |
1635989 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
|| ||| |||||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
1635990 |
ggatatgacttggagggaatattactctcatcttatagtggaaagtga |
1636037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 26617031 - 26616884
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||||| | |
|
|
| T |
26617031 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatttgggtgctatatttgggttt |
26616932 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
| |||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
26616931 |
gtacatggcttggagggaacattactctcatcttatagtggaaagtga |
26616884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 456662 - 456577
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggg |
179 |
Q |
| |
|
||||||||||| |||| |||| |||||| ||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
456662 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagtttgtgatgtcttatatgctgagatgtggggg |
456577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 40536626 - 40536559
Alignment:
| Q |
141 |
attggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatggcttggag |
208 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| | |||||||| |||| ||||||||||| |
|
|
| T |
40536626 |
attggagcttgtgatgctctgcatgctgagatgtggggtctttatttgggactagatatggcttggag |
40536559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 42794285 - 42794537
Alignment:
| Q |
1 |
acataggatggaaacgacctcagtaaggttggatcaagcgcaacagcgacggttccggcaaggatttgggtcatatttccggttgtggtggtatttttcg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42794285 |
acataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtggtatttttcg |
42794384 |
T |
|
| Q |
101 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42794385 |
cgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgtcttacatgctgagatgtgggggttgtatttgggtatagagatg |
42794484 |
T |
|
| Q |
201 |
gcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42794485 |
gcttggagggagcattttgatcatcttattgtggaaagtgactcgaagatatt |
42794537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 54812648 - 54812396
Alignment:
| Q |
1 |
acataggatggaaacgacctcagtaaggttggatcaagcgcaacagcgacggttccggcaaggatttgggtcatatttccggttgtggtggtatttttcg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54812648 |
acataggatggaaacgacctcaggaaggttggatcaagctcaacggcgacggtgcctgcaaggatatgggtcatatttccggttgtggtggtatttttcg |
54812549 |
T |
|
| Q |
101 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54812548 |
tgatgcagatggtaaatggattaaaggctacactaagaagattgaagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
54812449 |
T |
|
| Q |
201 |
gcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54812448 |
gcttggagggagcattttgatcatcttattgtggaaagtgactcgaagatatt |
54812396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 46428355 - 46428607
Alignment:
| Q |
1 |
acataggatggaaacgacctcagtaaggttggatcaagcgcaacagcgacggttccggcaaggatttgggtcatatttccggttgtggtggtatttttcg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46428355 |
acataggatggaaacgacctcaggaaggttgaatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtggtatttttcg |
46428454 |
T |
|
| Q |
101 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46428455 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgttgagatgtgggggttgtatttgggtatagagatg |
46428554 |
T |
|
| Q |
201 |
gcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46428555 |
gcttgcagggagcattttgatcatcttattgtggaaagtgactcgaagatatt |
46428607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 43912652 - 43912400
Alignment:
| Q |
1 |
acataggatggaaacgacctcagtaaggttggatcaagcgcaacagcgacggttccggcaaggatttgggtcatatttccggttgtggtggtatttttcg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||| |||| | || |||||||| |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
43912652 |
acataggatggaaacgacctcagaaaggttggatcaagctcaacagtgacgatgcctgcaaggatatgggtcatattttcggttgtggtgatatttttcg |
43912553 |
T |
|
| Q |
101 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
200 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
43912552 |
tgatgtagatgataaatggattaaaggctacgttaagaagatttgagcttgtgataccttacatgatgagatgtgagggttgtatttgggtatagagatg |
43912453 |
T |
|
| Q |
201 |
gcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| |||||||| |
|
|
| T |
43912452 |
gcttggagggagcattttgatcatcttatagttgaaagtgactcaaagatatt |
43912400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 54346627 - 54346774
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
54346627 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggactatatttgggttt |
54346726 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
54346727 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtga |
54346774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 27156474 - 27156327
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
|||||| |||| |||| |||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | ||||||||| | |
|
|
| T |
27156474 |
tttttcatgattcagacggtagatggatcaaaggctacactaagaagattagagcttgtgatgccttacatgctgagatgtgaggactatatttgggttt |
27156375 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
|| || ||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
27156374 |
ggacatagcttggagggaacattactctcatcttatagtggaaagtga |
27156327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 34265164 - 34265262
Alignment:
| Q |
97 |
ttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatag |
195 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
34265164 |
ttcgtgattcagatggtaaatggattaaatgttacactaaaaagattgaagcttgtgatgtcttacatgctgagatgtgggagttgtatttgtgtatag |
34265262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 1223362 - 1223110
Alignment:
| Q |
1 |
acataggatggaaacgacctcagtaaggttggatcaagcgcaacagcgacggttccggcaaggatttgggtcatatttccggttgtggtggtatttttcg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
1223362 |
acataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccgattgtggtggtatttttcg |
1223263 |
T |
|
| Q |
101 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
200 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1223262 |
tgacgcatatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
1223163 |
T |
|
| Q |
201 |
gcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1223162 |
gcttggagggagcattttgatcatcttattgtggaaagtgactcgaagatatt |
1223110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 47597990 - 47597738
Alignment:
| Q |
1 |
acataggatggaaacgacctcagtaaggttggatcaagcgcaacagcgacggttccggcaaggatttgggtcatatttccggttgtggtggtatttttcg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47597990 |
acataggatggaaacgacctcaagaaggttggatcaaactcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtggtatttttcg |
47597891 |
T |
|
| Q |
101 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47597890 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtataaagatg |
47597791 |
T |
|
| Q |
201 |
gcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47597790 |
gcttgaagggagcattttgatcatcttattgtggaaagtgactcgaagatatt |
47597738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 58 - 253
Target Start/End: Complemental strand, 43271133 - 43270938
Alignment:
| Q |
58 |
gcaaggatttgggtcatatttccggttgtggtggtatttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgc |
157 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || |||||||| || |||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43271133 |
gcaaggataggggtcatattttttgttgtggtagtctttttcgtaattcagatggtaaattgattaaaggctacactaagaagatgtgagcttgtgatgc |
43271034 |
T |
|
| Q |
158 |
cttacatgctgagatgtgggggttgtatttgggtatagagatggcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||||| ||||||||||| || ||||||||| |||||||| |
|
|
| T |
43271033 |
cttacatgctgagatgtatgggttgtatttagatatagacatggcttggagggagcatttagatcatcttatagttaaaagtgactctaagatatt |
43270938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 36894723 - 36894576
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
|||||| |||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
36894723 |
tttttcatgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
36894624 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
36894623 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtga |
36894576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 34390112 - 34389965
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||||||||| || | |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || | |
|
|
| T |
34390112 |
tttttcgtgattcaaacggtagatggatcaaaggctatactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgagttt |
34390013 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
34390012 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtga |
34389965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 23409860 - 23409929
Alignment:
| Q |
119 |
gattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttggg |
190 |
Q |
| |
|
||||||| |||||||||||||||| | | ||||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
23409860 |
gattaaatgctacactaagaagatatgtg--tgtgatgccttacatcctgagacgtggtggttgtatttggg |
23409929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 28561536 - 28561459
Alignment:
| Q |
111 |
ggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttg |
188 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || || || |||| ||| ||||| ||||| ||||||||||||| |
|
|
| T |
28561536 |
ggtagatggattaaaggctacactaagaagaatgatgcatgagatgtcttgcatgccaagatgcaggggttgtatttg |
28561459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 22065601 - 22065349
Alignment:
| Q |
1 |
acataggatggaaacgacctcagtaaggttggatcaagcgcaacagcgacggttccggcaaggatttgggtcatatttccggttgtggtggtatttttcg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||| |||||| || |||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
22065601 |
acataggatggaaacgacctcaggaaggttggatcaagctcaacagtgacggtgcctgcaaggatatgggtcatattttcggttgtggtggtatttttcg |
22065502 |
T |
|
| Q |
101 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
22065501 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatttgggggttgtatttgggtatagaaatg |
22065402 |
T |
|
| Q |
201 |
gcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22065401 |
gcttggagggagcattttgatcatcttattgtggaaagtgactcgaagatatt |
22065349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 94 - 250
Target Start/End: Complemental strand, 23085217 - 23085061
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
23085217 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggtctatatttgggtct |
23085118 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtgacttgaagat |
250 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||| ||||||||||| || ||||| |
|
|
| T |
23085117 |
ggacatggcttggagggaacattgctctcatcttatagtggaaagtgatttaaagat |
23085061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 23949590 - 23949737
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
23949590 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggactatatttgggttt |
23949689 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
23949690 |
ggacatggcttggagggaacattaatctcatcttatagtggaaagtga |
23949737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 5308534 - 5308681
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||||||||| || | |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
5308534 |
tttttcgtgattcaaacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggactatatttgggttt |
5308633 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
5308634 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtga |
5308681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 2601096 - 2601222
Alignment:
| Q |
112 |
gtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatggcttggaggga |
211 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||| ||| ||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
2601096 |
gtaaatgaattaaaggctacactaagtagattggagtttgtgataccttacatg---agacgtgggagttgtatttgggtatagatatggcttggaggga |
2601192 |
T |
|
| Q |
212 |
gcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
|||||||| || |||||| ||||||||||| |
|
|
| T |
2601193 |
gcattttggtcgtcttatagtggaaagtga |
2601222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 50952875 - 50952727
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggct-acactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggta |
192 |
Q |
| |
|
||||||||||| |||| |||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
50952875 |
tttttcgtgattcagacggtagatagatcaaaggcttacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtt |
50952776 |
T |
|
| Q |
193 |
tagagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
| || |||||||||||||| |||| | ||||||| ||||||||||| |
|
|
| T |
50952775 |
tggacatggcttggagggaacattactctaatcttatagtggaaagtga |
50952727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 4560714 - 4560464
Alignment:
| Q |
1 |
acataggatggaaacgacctcagtaaggttggatcaagcgcaacagcgacggttccggcaaggatttgggtcatatttccggttgtggtggtatttttcg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| | ||||||| ||| || |||||||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
4560714 |
acataggatggaaacgacctcaggaaggttggatcaagctcgacagcgatggtgcctgcaaggatatgggtcatattttcaattgtggtggtatttttcg |
4560615 |
T |
|
| Q |
101 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4560614 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatactgagatgtgggggttgtatttgggtacagagatg |
4560515 |
T |
|
| Q |
201 |
gcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4560514 |
gc--ggagggagcattttgatcatcttattgtggaaagtgactcgaagatatt |
4560464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 18883180 - 18883432
Alignment:
| Q |
2 |
cataggatggaaacgacctcagtaaggttggatcaagcgcaacagcgacggttccggcaaggatttgggtcatatttccggttgtggtggtatttttcgt |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||| ||||||| || ||||||| | ||||||||||||||||||||||||||||||| | |
|
|
| T |
18883180 |
cataggatggaaacgacctcaggaaggttggatcaagctcaacaacgacggtgcctccaaggatctaggtcatatttccggttgtggtggtatttttcat |
18883279 |
T |
|
| Q |
102 |
gatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtattt-gggtatagagatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||| | ||| |
|
|
| T |
18883280 |
gatgcagatggtaaatggattaaaggctgcactaataagattggaacttgtgatgccttacttgttgagatgtgggggttgtatttggggtataaatatg |
18883379 |
T |
|
| Q |
201 |
gcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
18883380 |
gcttggagggagcattttgatcatcttatagtggaaaatgactcaaagatatt |
18883432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 119 - 253
Target Start/End: Original strand, 18933970 - 18934104
Alignment:
| Q |
119 |
gattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatggcttggagggagcatttt |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18933970 |
gattaaaggctacactaaaaagattggagcttgtgatgccttacatgctgagatgtggaggttgtatttgggtatagagatggcttagagggagcatttt |
18934069 |
T |
|
| Q |
219 |
gatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
18934070 |
gatcatcttattgtggaaagtgacccgaagatatt |
18934104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 18259446 - 18259299
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||||||||| |||| |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
18259446 |
tttttcgtgattcagacggtagatggatcaaagactacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtct |
18259347 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
|| |||| ||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
18259346 |
ggacatggtttggagggaacattactctcatcttatagtggaaagtga |
18259299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 84 - 250
Target Start/End: Complemental strand, 34081055 - 34080889
Alignment:
| Q |
84 |
tgtggtggtatttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgt |
183 |
Q |
| |
|
||||| ||| ||||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | | | |
|
|
| T |
34081055 |
tgtggcggtctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgataagtgggagctat |
34080956 |
T |
|
| Q |
184 |
atttgggtatagagatggcttggagggagcattttgatcatcttattgtggaaagtgacttgaagat |
250 |
Q |
| |
|
|||||||| | || |||||||||||||| |||| ||||||||| ||||||||||| || ||||| |
|
|
| T |
34080955 |
atttgggtttggacatggcttggagggaacattactctcatcttatagtggaaagtgatttaaagat |
34080889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 32216697 - 32216774
Alignment:
| Q |
111 |
ggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttg |
188 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| | ||| |||||||| |||| || |||| |||||||||||| |
|
|
| T |
32216697 |
ggtagatggattaaaggctacaataagaagattggtgtgtgtcatgccttatatgcagatatgtaagggttgtatttg |
32216774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 24473247 - 24473499
Alignment:
| Q |
1 |
acataggatggaaacgacctcagtaaggttggatcaagcgcaacagcgacggttccggcaaggatttgggtcatatttccggttgtggtggtatttttcg |
100 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||| ||||||||||| | || |||||||| ||||||||||||| || | ||||||||||||||| |
|
|
| T |
24473247 |
acataggatggaaacaacctcaggatagttggatcaagctcaacagcgacgatgcctgcaaggatatgggtcatatttctgggtttggtggtatttttcg |
24473346 |
T |
|
| Q |
101 |
tgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24473347 |
tgatgcagatggtaaatggattaaaggttacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttggatatagagatg |
24473446 |
T |
|
| Q |
201 |
gcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24473447 |
gcttggagtgagcattttgatcatcttattgtggaaagtgactcgaagatatt |
24473499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 8020051 - 8019904
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
8020051 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggactatatttgggttt |
8019952 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
8019951 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtga |
8019904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 48618826 - 48618973
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | | |
|
|
| T |
48618826 |
ttttttgtgattcagatggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttggattt |
48618925 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
|| |||||||||||||| |||| | ||||||| ||||||||||| |
|
|
| T |
48618926 |
ggacatggcttggagggaacattactcttatcttatagtggaaagtga |
48618973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 29214035 - 29213919
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||||||||| ||| |||| |||| | ||| ||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||||| | |
|
|
| T |
29214035 |
tttttcgtgatttagacggtagatgggtcaaatgctacactaagaagattagagcttgtgatgccttgcatgctgagatgt-ggggctatatttgggttt |
29213937 |
T |
|
| Q |
194 |
agagatggcttggaggga |
211 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
29213936 |
ggacatggcttggaggga |
29213919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 238
Target Start/End: Complemental strand, 29760161 - 29760006
Alignment:
| Q |
84 |
tgtggtggtatttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggg-ttg |
182 |
Q |
| |
|
|||||||| ||||| ||||| || | || |||||||| || || || ||||||||||||||| ||||||||| ||||||| |||||| |||||| ||| |
|
|
| T |
29760161 |
tgtggtggccttttttgtgatacaaacggaaaatggatcaatggttatgctaagaagattggagtttgtgatgctttacatgttgagatatgggggattg |
29760062 |
T |
|
| Q |
183 |
tatttgggtatagagatggcttggagggagcattttgatcatcttattgtggaaag |
238 |
Q |
| |
|
|| |||| | || |||||||||||||| |||||| ||| ||||| |||||||| |
|
|
| T |
29760061 |
tacttggccttggaaatggcttggagggaacatttttctcaccttatagtggaaag |
29760006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24472721 - 24472657
Alignment:
| Q |
1 |
acataggatggaaacgacctcagtaaggttggatcaagcgcaacagcgacggttccggcaaggat |
65 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||| ||||||||||||| || |||||||| |
|
|
| T |
24472721 |
acataggatggaaacaacctcaggatagttggatcaagctcaacagcgacggtgcctgcaaggat |
24472657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 13186780 - 13186927
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
13186780 |
tttttcgtgatttagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggactatatttgggttt |
13186879 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
13186880 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtga |
13186927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 17290001 - 17290080
Alignment:
| Q |
174 |
tgggggttgtatttgggtatagagatggcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17290001 |
tgggggttgtatttgggtgtagagatggcttggagggagcattttgatcatcttattgtggaaagtgactcgaagatatt |
17290080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 40190726 - 40190579
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtat |
193 |
Q |
| |
|
||||||||||| |||| | || |||||| |||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| | ||||||| | |
|
|
| T |
40190726 |
tttttcgtgattcagacgttagatggatcaaaggctacattaagaagattggagcttgtgatgccttatatgctaagatgtgggggctatatttggactt |
40190627 |
T |
|
| Q |
194 |
agagatggcttggagggagcattttgatcatcttattgtggaaagtga |
241 |
Q |
| |
|
||| ||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
40190626 |
agacatggcttggagcgagcattactctcatcttatagtggaaagtga |
40190579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 7305399 - 7305275
Alignment:
| Q |
84 |
tgtggtggtatttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgt |
183 |
Q |
| |
|
|||||||| |||||| |||| |||| |||| |||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
7305399 |
tgtggtggcctttttcatgattcagacggtagatggatcaaagactacactaaaaagattggagcttgtgatgccttacatgctgagatgtgggggctat |
7305300 |
T |
|
| Q |
184 |
atttgggtatagagatggcttggag |
208 |
Q |
| |
|
|||||||| | || ||| ||||||| |
|
|
| T |
7305299 |
atttgggtttggacatgacttggag |
7305275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 37307523 - 37307445
Alignment:
| Q |
94 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagat |
172 |
Q |
| |
|
||||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
37307523 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttatatgttgagat |
37307445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 26381576 - 26381454
Alignment:
| Q |
96 |
tttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatag |
195 |
Q |
| |
|
|||||||| |||| |||| ||||||||||| |||||||||||||||||| || |||||| |||||| ||||||||||||| |||||||||| | | | |
|
|
| T |
26381576 |
tttcgtgactcagaaggtagatggattaaagactacactaagaagattggtgcgtgtgataacttacaagctgagatgtgggcgttgtatttgagattgg |
26381477 |
T |
|
| Q |
196 |
agatggcttggagggagcatttt |
218 |
Q |
| |
|
| ||||||||||| |||| |||| |
|
|
| T |
26381476 |
acatggcttggagagagcgtttt |
26381454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 28372102 - 28372025
Alignment:
| Q |
176 |
ggggttgtatttgggtatagagatggcttggagggagcattttgatcatcttattgtggaaagtgacttgaagatatt |
253 |
Q |
| |
|
||||||||||||||||||||| ||| ||| || ||||||||||||||||| || || |||||| ||| |||||||| |
|
|
| T |
28372102 |
ggggttgtatttgggtatagacatgacttctagagagcattttgatcatctcatagttgaaagttactctaagatatt |
28372025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 3733159 - 3733098
Alignment:
| Q |
117 |
tggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggg |
178 |
Q |
| |
|
||||| |||||||||| ||||||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
3733159 |
tggatcaaaggctacatgaagaagattggttcttgtgatgctctacatgcggagatgtgggg |
3733098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 355727 - 355944
Alignment:
| Q |
25 |
aaggttggatcaagcgcaacagcgacggttccggcaaggatttgggtcatatttccggttgtggtggtatttttcgtgatgcagatggtaaatggattaa |
124 |
Q |
| |
|
|||||| |||||||| ||||| || ||| | |||||||| ||||||||||| | |||||||| | ||||| ||||| | |||||||||| ||||| |
|
|
| T |
355727 |
aaggttcgatcaagctcaacaatgatggtgcatgcaaggataggggtcatattttggattgtggtgatcttttttgtgattcgtatggtaaatgaattaa |
355826 |
T |
|
| Q |
125 |
aggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatggcttggagggagcattttgatcat |
224 |
Q |
| |
|
||| |||||||||| ||||| || | ||||||||||||||| || |||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
355827 |
aggatacactaagacgattgaagtctttgatgccttacatgccgaaatgt-ggggttgtatttgggtatagatgtggcttggagggagcgctttgatcat |
355925 |
T |
|
| Q |
225 |
cttattgtggaaagtgact |
243 |
Q |
| |
|
||||| || |||| ||||| |
|
|
| T |
355926 |
cttatagtagaaaatgact |
355944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University