View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20760_low_15 (Length: 360)
Name: NF20760_low_15
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 6 - 339
Target Start/End: Complemental strand, 2044648 - 2044314
Alignment:
| Q |
6 |
acttgaaagcaatttgacgagccatctcagcttgtgctttgaggtaatcatcaaactcaccaatacgaccctcaaggcatggaatagttatggccaaaac |
105 |
Q |
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| T |
2044648 |
acttgaaagcaatttgacgagccatctcagcttgtgctttgaggtaatcatcaaactcaccaatacgaccctcaaggcatggaatagttatggccaaaac |
2044549 |
T |
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| Q |
106 |
caacaaaataaagctaatcttcattgcaattgcagccattattattcaaatagctgaatatatcttgataatgaaggttttgtataggcttcaacnnnnn |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2044548 |
caacaaaataaagctaatcttcattgcaattgcagccattattattcaaatagctgaatatatcttgataatgaaggttttgtataggcttcaacaactt |
2044449 |
T |
|
| Q |
206 |
nnnnnnnnnnnnnnngttcttggtttgtatgacaaggatgggtaaggtcttgagatttcaatagaaaaattacttgaccttagcaccaatgccaaatatt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2044448 |
tttttttttttttttgttcttggtttgtatgacaaggatgggtaaggtcttgagatttcaatagaaaaattacttgaccttagcaccaatgccaaatatt |
2044349 |
T |
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| Q |
306 |
aaaccaagattg-ttttattgtgttgaagtcatat |
339 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
2044348 |
aaaccaagattgtttttattgtgttgaagtcatat |
2044314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 6 - 344
Target Start/End: Original strand, 2287137 - 2287477
Alignment:
| Q |
6 |
acttgaaagcaatttgacgagccatctcagcttgtgctttgaggtaatcatcaaactcaccaatacgaccctcaaggcatggaatagttatggccaaaac |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2287137 |
acttgaaagcaatttgacgagccatctcagcttgtgctttgaggtaatcatcaaactcaccaatacgaccctcaaggcatggaatagttatggccaaaac |
2287236 |
T |
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| Q |
106 |
caacaaaataaagctaatcttcattgcaattgcagccattattattcaaatagctgaatatatcttgataatgaaggttttgtataggcttcaac-nnnn |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2287237 |
caacaaaataaagctaatcttcattgcaattgcagccattattattcaaatagctgaatatatcttgataatgaaggttttgtataggcttcaacaactt |
2287336 |
T |
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| Q |
205 |
nnnnnnnnnnnnnnnngttcttggtttgtatgacaaggatgggtaaggtcttgagatttcaatagaaaaattacttgaccttagcaccaatgccaaatat |
304 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2287337 |
ttttttttttttttttgttcttggtttgtaagacaaggatgggtaaggtctagagatctcaatagaaaaattacttgaccttagcaccaatgccaaatat |
2287436 |
T |
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| Q |
305 |
taaaccaagattg-ttttattgtgttgaagtcatattgctg |
344 |
Q |
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| T |
2287437 |
taaaccaagattgtttttattgtgttgaagtcatattgctg |
2287477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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