View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20760_low_18 (Length: 304)
Name: NF20760_low_18
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 163 - 286
Target Start/End: Complemental strand, 47372889 - 47372766
Alignment:
| Q |
163 |
cccaaggtgtttttgttgcatgtgagtgtgaagggatgaagttgagaatggaaagtagggttagaagaagcaaagaaggtggtgaaaatgaaaacaatga |
262 |
Q |
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| T |
47372889 |
cccaaggtgtttttgttgcaagtgagtgtgaagggatgaagttgagaatggaaagtagggttagaagaagcaaagaaggtggtgaaaatgaaaacaatga |
47372790 |
T |
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| Q |
263 |
atcgttaaattggggtgagaacgt |
286 |
Q |
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| T |
47372789 |
atcgttaaattggggtgagaacgt |
47372766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 47373039 - 47372952
Alignment:
| Q |
4 |
gttttgacccggaagaagaacaagaagaagatggtgaagttgatgctgacgatgtcatagatgaaaacgaacaactacaaaatgaagatgaattttc |
100 |
Q |
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| T |
47373039 |
gttttgacccggaagaagaacaagaagaagatggtgaagttgatgctgac---------gatgaaaacgaacaactacaaaatgaagatgaattttc |
47372952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 47386139 - 47386187
Alignment:
| Q |
232 |
gcaaagaaggtggtgaaaatgaaaacaatgaatcgttaaattggggtga |
280 |
Q |
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| T |
47386139 |
gcaaagaaggtggtgaaaatgaaaacaaagaatttttaaattggggtga |
47386187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 47385904 - 47385974
Alignment:
| Q |
21 |
gaacaagaagaagatggtgaagttgatgctgacgatgtcatagatgaaaacgaacaactacaaaatgaaga |
91 |
Q |
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| T |
47385904 |
gaacaagaagaggatgttgatgttgatgatgatgatgtcatagatgaaaatgaaaaaccacataataaaga |
47385974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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